G174379


Basic Information

Item Value
gene id G174379
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 1635392 ~ 1635656 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU206409
TAAAGCACAGATCAGCGTATATCATAATCATATATCCAGTTTGAGCTCAAGGTCAAGTCGCTGCTATTCAAAACGAAAGcaagaaagtgaaaaattaaCTTTGGTGATAATCTTTGACACGGAGATGTGCATGAAGACTGACTCTCCAACATTCAAACTAAATATTTACTGTGTTACAGCTGTACCATTCTGTATCGAGTGAAAAAATGACTCATGATTTTACTTCTGAATAGATATGAGTGAAACCGAACTAAAATGAGTTCCC

Function

GO: NA

KEGG:

id description
ko05034 Alcoholism

RNA

RNA id representative length rna type GC content exon number start site end site
TU206409 True 265 lncRNA 0.35 1 1635392 1635656

Neighbor

gene id symbol gene type direction distance location
sox6 sox6 coding downstream 137666 1324651 ~ 1497726 (-)
tmppe tmppe,LOC107585964,LOC107674465 coding downstream 475430 1148056 ~ 1159962 (-)
slc38a8b LOC108271372,LOC108444426,LOC107741399,LOC107577425 coding downstream 487416 1138521 ~ 1147976 (-)
aph1b aph1b,aph1a,LOC108271374,LOC108444443,LOC107700410 coding downstream 497689 1131031 ~ 1137703 (-)
LOC117598426 NA coding downstream 683063 951385 ~ 952329 (-)
rps13 rps13,LOC107586033,LOC107700620,LOC106561079 coding upstream 11464 1647120 ~ 1653478 (-)
LOC113536795 NA coding upstream 11673 1647329 ~ 1647458 (-)
caprin1a caprin1,LOC108429133 coding upstream 31970 1667626 ~ 1687076 (-)
ext2 ext2,LOC107593432 coding upstream 141685 1777341 ~ 1831151 (-)
tspan18a tspan18,tspan18a,LOC107585935,LOC107671373,LOC107593454,LOC107750555 coding upstream 196670 1832326 ~ 1874531 (-)
G174352 NA non-coding downstream 103178 1531816 ~ 1532214 (-)
G174345 NA non-coding downstream 165410 1465494 ~ 1469982 (-)
G174329 NA non-coding downstream 215647 1419369 ~ 1419745 (-)
G174325 NA non-coding downstream 221202 1409997 ~ 1414190 (-)
G174322 NA non-coding downstream 250874 1381317 ~ 1384518 (-)
G174390 NA non-coding upstream 81181 1716837 ~ 1717245 (-)
G174622 NA non-coding upstream 355588 1991244 ~ 1991701 (-)
G174617 NA non-coding upstream 358445 1994101 ~ 1995636 (-)
G174606 NA non-coding upstream 409785 2045441 ~ 2050452 (-)
G174600 NA non-coding upstream 415953 2051609 ~ 2053711 (-)
G174247 fbxo22 other downstream 576158 1057656 ~ 1059234 (-)
fbxl8 fbxl8 other downstream 632360 999059 ~ 1003032 (-)
G174207 LOC108270943,LOC108444425 other downstream 672314 961496 ~ 963078 (-)
calca calca,LOC108271361,LOC107700617,LOC107593372,LOC107688176,LOC107750650,LOC107586036 other downstream 1601226 30281 ~ 34166 (-)
cd82a cd82 other upstream 221227 1856883 ~ 1933222 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other upstream 379066 2014722 ~ 2022231 (-)
G175098 NA other upstream 966758 2602414 ~ 2603211 (-)
G175048 zfhx3,LOC107679901,LOC107565374,LOC107738341 other upstream 1118699 2754355 ~ 2756525 (-)
serf2 NA other upstream 1914209 3549865 ~ 3581987 (-)

Expression


Co-expression Network