G174390


Basic Information

Item Value
gene id G174390
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 1716837 ~ 1717245 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU206422
cggctcttaatgcatgttttttccttctggagcatcagtgagcgtttgaaccttctgtaatagttgcatatgagtccctcagttgtcctcagtgtgaaaagatggatctcaaaatcatacagtcattgttggaaagggttcaaatacacaaaaaatgctggaaaaccaaagaatttgtgggagctgaaggatttttctgaagaacagcaggcagtttaactgttcagcaCAAACAAgcgactcatgaacaactatcagtaaacaaaaaaacacagctgtggatcattcaggtaacaacacagtattaagaatcaaggggatgtaaacttttgaacagggtcatttttataaattcaactattattttctcttgtggactttatgtaaacatcttttatgtgaaatatct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU206422 True 409 lncRNA 0.36 1 1716837 1717245

Neighbor

gene id symbol gene type direction distance location
caprin1a caprin1,LOC108429133 coding downstream 29761 1667626 ~ 1687076 (-)
rps13 rps13,LOC107586033,LOC107700620,LOC106561079 coding downstream 63359 1647120 ~ 1653478 (-)
LOC113536795 NA coding downstream 69379 1647329 ~ 1647458 (-)
plekha7b plekha7 coding downstream 78575 1517346 ~ 1638262 (-)
sox6 sox6 coding downstream 219111 1324651 ~ 1497726 (-)
ext2 ext2,LOC107593432 coding upstream 60096 1777341 ~ 1831151 (-)
tspan18a tspan18,tspan18a,LOC107585935,LOC107671373,LOC107593454,LOC107750555 coding upstream 115081 1832326 ~ 1874531 (-)
tp53i11a tp53i11,tp53i11a,LOC107687052,LOC108435353,LOC107671372 coding upstream 219581 1936826 ~ 1979679 (-)
LOC113536364 LOC108271342 coding upstream 279549 1996794 ~ 2010622 (-)
LOC113536684 znf821 coding upstream 336967 2054212 ~ 2072273 (-)
G174379 NA non-coding downstream 81181 1635392 ~ 1635656 (-)
G174352 NA non-coding downstream 184623 1531816 ~ 1532214 (-)
G174345 NA non-coding downstream 246855 1465494 ~ 1469982 (-)
G174329 NA non-coding downstream 297092 1419369 ~ 1419745 (-)
G174325 NA non-coding downstream 302647 1409997 ~ 1414190 (-)
G174622 NA non-coding upstream 273999 1991244 ~ 1991701 (-)
G174617 NA non-coding upstream 276856 1994101 ~ 1995636 (-)
G174606 NA non-coding upstream 328196 2045441 ~ 2050452 (-)
G174600 NA non-coding upstream 334364 2051609 ~ 2053711 (-)
G174632 NA non-coding upstream 356892 2074137 ~ 2074357 (-)
G174247 fbxo22 other downstream 657603 1057656 ~ 1059234 (-)
fbxl8 fbxl8 other downstream 713805 999059 ~ 1003032 (-)
G174207 LOC108270943,LOC108444425 other downstream 753759 961496 ~ 963078 (-)
calca calca,LOC108271361,LOC107700617,LOC107593372,LOC107688176,LOC107750650,LOC107586036 other downstream 1682671 30281 ~ 34166 (-)
cd82a cd82 other upstream 139638 1856883 ~ 1933222 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other upstream 297477 2014722 ~ 2022231 (-)
G175098 NA other upstream 885169 2602414 ~ 2603211 (-)
G175048 zfhx3,LOC107679901,LOC107565374,LOC107738341 other upstream 1037110 2754355 ~ 2756525 (-)
serf2 NA other upstream 1832620 3549865 ~ 3581987 (-)

Expression


Co-expression Network