G174949


Basic Information

Item Value
gene id G174949
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 2438615 ~ 2438837 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU207052
GGCGTTTTTAACTCAGCCGTGTCAGAGCCGAGTGCGCTGTTAAAAAACCTCTCTCTGCATGAAAGCAGCCCTTTTTAAACacgttgattttttttttcattttgagacAAAGATAAGTAAATACAGGAGAGATAATGAATAGAAGGGAAAATGAGCGTTGCCGCTCTCGGTGTTCAATCTCAGGGACAATTGCAGCATTTTGGGTGAAATTGCTAGCAGGTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU207052 True 223 lncRNA 0.42 1 2438615 2438837

Neighbor

gene id symbol gene type direction distance location
hnf4b LOC108271394,LOC108429112 coding downstream 122480 2301621 ~ 2316135 (-)
marveld3 marveld3 coding downstream 256230 2178548 ~ 2182385 (-)
LOC113536684 znf821 coding downstream 366342 2054212 ~ 2072273 (-)
LOC113536364 LOC108271342 coding downstream 427993 1996794 ~ 2010622 (-)
tp53i11a tp53i11,tp53i11a,LOC107687052,LOC108435353,LOC107671372 coding downstream 458936 1936826 ~ 1979679 (-)
dhx38 dhx38,LOC106562086,LOC106587179 coding upstream 537622 2976459 ~ 2997108 (-)
LOC113536623 LOC108270986,LOC105889116,LOC107659108 coding upstream 565098 3003935 ~ 3008616 (-)
zgc:162592 LOC108270985 coding upstream 581717 3020554 ~ 3023480 (-)
cpne7 cpne7,LOC107715467,LOC107738346 coding upstream 637141 3075978 ~ 3128645 (-)
rpl13 rpl13 coding upstream 697599 3136436 ~ 3141997 (-)
G174929 NA non-coding downstream 26648 2411672 ~ 2411967 (-)
G174708 NA non-coding downstream 161248 2277046 ~ 2277367 (-)
G174680 NA non-coding downstream 172868 2222613 ~ 2265747 (-)
G174674 NA non-coding downstream 231310 2174167 ~ 2207305 (-)
G174665 NA non-coding downstream 274752 2163636 ~ 2163863 (-)
G174970 NA non-coding upstream 37798 2476635 ~ 2476835 (-)
G174987 NA non-coding upstream 51465 2490302 ~ 2490506 (-)
G175030 NA non-coding upstream 97793 2536630 ~ 2536840 (-)
G175097 NA non-coding upstream 168171 2607008 ~ 2607455 (-)
G175099 NA non-coding upstream 170092 2608929 ~ 2609186 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other downstream 416384 2014722 ~ 2022231 (-)
cd82a cd82 other downstream 505393 1856883 ~ 1933222 (-)
G174247 fbxo22 other downstream 1379381 1057656 ~ 1059234 (-)
fbxl8 fbxl8 other downstream 1435583 999059 ~ 1003032 (-)
G174207 LOC108270943,LOC108444425 other downstream 1475537 961496 ~ 963078 (-)
G175098 NA other upstream 163577 2602414 ~ 2603211 (-)
G175048 zfhx3,LOC107679901,LOC107565374,LOC107738341 other upstream 315518 2754355 ~ 2756525 (-)
serf2 NA other upstream 1111028 3549865 ~ 3581987 (-)
G175497 NA other upstream 1130504 3569341 ~ 3572262 (-)
mical2a mical2 other upstream 1413010 3851847 ~ 3909893 (-)

Expression


Co-expression Network