G175030


Basic Information

Item Value
gene id G175030
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 2536630 ~ 2536840 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU207133
GCCGGATCGAGAACAGAAGCCAAACAGATGGATACAGGGTCAAATCTCAGTGTTCGTCGAAACACCCTGAAGTGTAGCAAAGTTCTCCGCTTCAATGTTGTGGATATTAAAGTTATATTCACGTATTGCTCATACTACAGgacattttaagaaataaactGAAAGACTGACGCTGTTCTTCTGCAATCATGTGGCATTTTCAAACTCAAac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU207133 True 211 lncRNA 0.40 1 2536630 2536840

Neighbor

gene id symbol gene type direction distance location
hnf4b LOC108271394,LOC108429112 coding downstream 220495 2301621 ~ 2316135 (-)
marveld3 marveld3 coding downstream 354245 2178548 ~ 2182385 (-)
LOC113536684 znf821 coding downstream 464357 2054212 ~ 2072273 (-)
LOC113536364 LOC108271342 coding downstream 526008 1996794 ~ 2010622 (-)
tp53i11a tp53i11,tp53i11a,LOC107687052,LOC108435353,LOC107671372 coding downstream 556951 1936826 ~ 1979679 (-)
dhx38 dhx38,LOC106562086,LOC106587179 coding upstream 439619 2976459 ~ 2997108 (-)
LOC113536623 LOC108270986,LOC105889116,LOC107659108 coding upstream 467095 3003935 ~ 3008616 (-)
zgc:162592 LOC108270985 coding upstream 483714 3020554 ~ 3023480 (-)
cpne7 cpne7,LOC107715467,LOC107738346 coding upstream 539138 3075978 ~ 3128645 (-)
rpl13 rpl13 coding upstream 599596 3136436 ~ 3141997 (-)
G174987 NA non-coding downstream 46124 2490302 ~ 2490506 (-)
G174970 NA non-coding downstream 59795 2476635 ~ 2476835 (-)
G174949 NA non-coding downstream 97793 2438615 ~ 2438837 (-)
G174929 NA non-coding downstream 124663 2411672 ~ 2411967 (-)
G174708 NA non-coding downstream 259263 2277046 ~ 2277367 (-)
G175097 NA non-coding upstream 70168 2607008 ~ 2607455 (-)
G175099 NA non-coding upstream 72089 2608929 ~ 2609186 (-)
G175100 NA non-coding upstream 73234 2610074 ~ 2611557 (-)
G175101 NA non-coding upstream 75608 2612448 ~ 2612915 (-)
G175102 NA non-coding upstream 76103 2612943 ~ 2613769 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other downstream 514399 2014722 ~ 2022231 (-)
cd82a cd82 other downstream 603408 1856883 ~ 1933222 (-)
G174247 fbxo22 other downstream 1477396 1057656 ~ 1059234 (-)
fbxl8 fbxl8 other downstream 1533598 999059 ~ 1003032 (-)
G174207 LOC108270943,LOC108444425 other downstream 1573552 961496 ~ 963078 (-)
G175098 NA other upstream 65574 2602414 ~ 2603211 (-)
G175048 zfhx3,LOC107679901,LOC107565374,LOC107738341 other upstream 217515 2754355 ~ 2756525 (-)
serf2 NA other upstream 1013025 3549865 ~ 3581987 (-)
G175497 NA other upstream 1032501 3569341 ~ 3572262 (-)
mical2a mical2 other upstream 1315007 3851847 ~ 3909893 (-)

Expression


Co-expression Network