G175046


Basic Information

Item Value
gene id G175046
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 2760210 ~ 2766605 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU207149
tgatgaaatattttcaaaggAGTATATTCAATTACCATCTACAATCAACTTAACTAGGACAACAAGGTTTTTTGTGAcaaaagtttttctttaaaagtctGAAGTTCCATGTGGTTTATGTATGTTAGTCTCCATGTAATTTGGTACAGTTTGGaaatcttcatcatataattaCAGTAACAAAAAAGCTAACAAGACTACAGTATAGAAAAGACATCAAGAACAACATTTTTGGTTTAACTTGCTCTTTTTTTGTACATTGCAAGGCTGTTTTTTCTACCCTCGGGTGGGCTACCTGGAGCCACTGAGCCGTTCTTGTGAGGCTCAAAGGAGGAATAattcaagaaaataaaaaataaaatcaaacaaacaaacaaaaaaagcattaaaaaaaattgtggcaCCAGGAGTCACGAAAGGAACAGAGAGCTCCATGTAGCAGTTTGTCTTTGAAATTGGAGctcgtggtttttttttgtttggttgcttgttaattttggtttcatttgctTTTTCGTGTTTAACTGCTTCCTCAGGAATGACAGCCAAGAAAACCCCTCACACTCCTTGAACAGCGAGTCCTTTATTTTTCAATGGTTTGATGAGATTTTTTTCGGCTGACTCCAGGTCAGTGCTGTCCGTCGGCGAGACGAAGAAATGAAACAGGTAGCAACACCATGGACTGGGTGAAAATAGAGACGCGTGGTACTGTCCATCCTGTGGATTTTATCCACGATTCCGAAGAAGCGGCTGATCCAGCCACTTCCAGAAGTCTCCAGGTTTATTCCTCTCTGTTTTCACATTCTGTATGTCCACTGGTTGCTGAGTCTGTTTCCATAGGCATATTGtcagtaattaaataatgacttgATATCAAGAGGCGcctctgattatttttcctgcCTTTGGCTCCCATCCCCAGTTTTGACAGCCTTCCTAGACATTTTAACGACATTTTCCAAAGCTTCCCAGAGTTCGGTTCtctttgttttccttctttgtcatttaaaaaaaagttgatgtcttctttaaatatatctatatctgtatacaTGTTTCTTCACAGTGGGCAAAAAGGATGACCTCTACAGCAAAACCtgccttctgtctctctttgcaaagtgtccaaaaaaaaaaatcaagtatcCCAATGAGAGTTGATGTATCTCAGTCATGTGTTGCGTTGTGCCacaataaatatacactcatcaGGGGCACCAACTTTTCATCTGCATTATGCTTTGGccacatacatatatttaatgaagtgaataaaaaaaactgctcagTGCTTCAGTATCAATTTCTCATTACCAAATTATTAGGACtttctggaggaaaaaaacaaacaaaaaaaactttccctTGTACTGAAGAAACAGCTTTGCAGTTTTGAATGTTTTGGTGTGAAAtgaaagtggagaaaaataataaaatacaaaactaaataaactgaTGTTGActcctaaaaaaacaaaacaaaacacacacagtccatgCTGGCAGAGTTGATTGTGAGGATCTGAACTTCATCCCTCACAAAATAAAGAGCCCATTAAATAAAGAGAACACTTTGGAAGCAAGAGATCAAACATTGTCAAGAAAGACAAATAGAGGAACATTGGTACACCATTAAAGTGGCCAGGtcttagaataaaaaaaaaagtgattgaaATTTAAAGCTGGTGTTACAACGTTAATTTATgcatacaacaaaaaaaaacatcaacacaaattaatatacagaaaataaaatacaaatagttatatgaaaataataaatgtccgacatgatttgaaatgaaagtCGAAgcaaaaagcattaaaaaataaactatacaTCAGAATTCTTACAAataattatggaaaaaaaatattttaggtaACAGGATTGAACAGAAGTGGCAAGCTTTGcataccaaaaaataaaataaaataatcgaCCAAATTTCAATAgcatgcagattttttttttaaacaccaaatCACATTGCTCTGCAAGACGTAACATTCTTTAACACACTTCCTAGATTGCAGCAATGTACCATGTAGGCCAATACACTTGCTGTACAGTTGTGGCCAGTTCAAATGAATCCTTTTTGGTGAGAAAAAGactctttattaaaaaagaaaaaaaaaaaactggggaaATTTGGATTAAACAGAACCATTTCCATTGACCTCTTTGGACAAAAAGGTAAGAATCAccatctaataataataataaataaaaacactgctgcTTTTTTCCAGTCTTATAACGCTTTGGAATGAAGATGTCCCTTGGAAAAGCTGTAGCAATACACACCAAAAAATTGGCTTTACACCCTGCAGAAACCTGGGGCAGGTCCCTACTTGATTTTCCACAAGGGGAGGCCACCATTCcacactttatttctttctcagaCTCTTTAAAGACGGAGAGGCATGATGACACTAGACCAGTGAGACATGTTAGGACCAGATGCATTacaatatgtacatttttggTTAGCCACTGTTACATGATGATCTATTTCAAGTGCGCAAACAGCCTTAACTGGCTGCAGGGACGTGAACTCCCTTACACGACTCCAAAAACGGCGATGTTCATTAACCCAAGATGGCGGAATTACAGTCATTGTTAATGTGGGAGAAAATAGACTTGTACTCAAATTCAATATAAAGATGCTGTCATTTCTTAAGAAATCAGATGCGCTATTTGGAATGCACTGTTCTTTACAAACATAACAGATCATTGGCTTTTTGACATTGGtctgttaaaaaagaaagaaagaaagaaagaaagaaagaaagaaggaaagaaagaaaaagaaagaaaacaataaagccAAAATGTCCTTTGGAACATATATTCACAGTCTTCAAAGTTCCGTTTTTgcaacaagaagaaaaaatgtcGCAGAGGCAGGGAAATGGTttactcagttttttttttttgtttgtttttttttaaagcttagcCAAGAAGTAAAATGAGCATGCATCTAGGTATTCTTCTTTTTCAAAATCTACATTAGCAGCAAAACGTATGTCCTCAGAGACCAGAccttatacattttctttaaaaaaaaaaaaaaaaaaaaagtatctcgTGTGACAAGAAGAGTTAAACAAAGAGATTCTCCACTTCTATCTTACAAACTGCAATGGCTCTGTAATGGTGCTACTCCACAATGCAAGGACGAATGTccttttttggtttttggtaTTCTTGGTATTTTTCTACGTAAAAAAGCTACCTGTCTGCTTGCAAAGAAGCAAAGACGGCAACTCTGATGCGTACgccttttattttaaaactttgttttcttttcttaaaaactGCAACAAATTCTCAAGTATAAAGAAGCCTCTTTTCTCATCTTTATGCACCAATGGTGAAAGTGTTTAGTCTTTGGATTTTCTTTTCGTTTTAAAGCgtgagaattattattattctttttcttgtatgacaacaacaacaaaaaaaggaagaaataataaaaaaaagaaaaaaaattaaagcccATAACAGACTGCAGCCACACTGCATAAAATACACATCTGCTTTGTAGTGCCAAAGGAGAAAGATCTCCGTACCTACAAAATGCAGTGGAAGCaaaaaaaggaaggagagagtaacacacacacacaaaaaaaagacagagataaAGTAAGTCGAGACGTTTGTAAGTGCACAATAGGTAACACAAATATAAGtgaataataattttcaaaacagatctcttttcctttttttggtcAGGTGCTGCACCAACCGTCAAAGGAAAGAAACCCCTCATGAAACCAAAGGGATTCTGCCGAGTCTGTTGTTGGCAGTTTGGGtgaacaaaatccaagatgCGGATTTGACTATACTGAAATAAAGTACAGATCAGTTCCTGCTCCTTAATCTAGTCTATTGGAATGACCAAGACAACATCAAATGAAGCGCTTTAAGGTTGGACAATACAAAAGCTAAATGTACACAAAGATTATTCAATCTACCAtactgtttaaatttatttccaatGCAACAATCTACTTAACAcgaaaaatgtttatatcGCTGTTGGATCTGATGCTAAAGCAGCCTGCAGAGCTTGAAGCTGAGCAGGATCAACCACATATTCCATGCCAGGAGTTGGCATTGAGGTGGCTGGAACAGCTGTGTCTGGTTTTTCTTTCTTGGCACTGGCAGCAGAAGTGGAGGGAGCAGGAGTACCCGCAGTTGAGGATGGTGTGGAGGGCTTCTCGACTTTTTCCTTGGACTTTTCTTTCTCCCTGGCTTTCTCAGTTTCACGCTCTTTGAGAGGATCAGCCCGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU207149 True 4309 lncRNA 0.36 2 2760210 2766605

Neighbor

gene id symbol gene type direction distance location
hnf4b LOC108271394,LOC108429112 coding downstream 444075 2301621 ~ 2316135 (-)
marveld3 marveld3 coding downstream 577825 2178548 ~ 2182385 (-)
LOC113536684 znf821 coding downstream 687937 2054212 ~ 2072273 (-)
LOC113536364 LOC108271342 coding downstream 749588 1996794 ~ 2010622 (-)
tp53i11a tp53i11,tp53i11a,LOC107687052,LOC108435353,LOC107671372 coding downstream 780531 1936826 ~ 1979679 (-)
dhx38 dhx38,LOC106562086,LOC106587179 coding upstream 209854 2976459 ~ 2997108 (-)
LOC113536623 LOC108270986,LOC105889116,LOC107659108 coding upstream 237330 3003935 ~ 3008616 (-)
zgc:162592 LOC108270985 coding upstream 253949 3020554 ~ 3023480 (-)
cpne7 cpne7,LOC107715467,LOC107738346 coding upstream 309373 3075978 ~ 3128645 (-)
rpl13 rpl13 coding upstream 369831 3136436 ~ 3141997 (-)
G175045 zfhx3,LOC107738341,LOC107659104 non-coding downstream 384 2756832 ~ 2759826 (-)
G175110 NA non-coding downstream 29337 2729695 ~ 2730873 (-)
G175109 NA non-coding downstream 34457 2725094 ~ 2725753 (-)
G175050 NA non-coding downstream 52327 2613845 ~ 2707883 (-)
G175102 NA non-coding downstream 146441 2612943 ~ 2613769 (-)
G175213 NA non-coding upstream 240399 3007004 ~ 3007662 (-)
G175329 NA non-coding upstream 438652 3205257 ~ 3205466 (-)
G175330 NA non-coding upstream 440146 3206751 ~ 3206971 (-)
G175333 NA non-coding upstream 443542 3210147 ~ 3210404 (-)
G175483 NA non-coding upstream 745386 3511991 ~ 3512232 (-)
G175048 zfhx3,LOC107679901,LOC107565374,LOC107738341 other downstream 3685 2754355 ~ 2756525 (-)
G175098 NA other downstream 156999 2602414 ~ 2603211 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other downstream 737979 2014722 ~ 2022231 (-)
cd82a cd82 other downstream 826988 1856883 ~ 1933222 (-)
G174247 fbxo22 other downstream 1700976 1057656 ~ 1059234 (-)
serf2 NA other upstream 783260 3549865 ~ 3581987 (-)
G175497 NA other upstream 802736 3569341 ~ 3572262 (-)
mical2a mical2 other upstream 1085242 3851847 ~ 3909893 (-)
bola3 bola3,LOC107686851,LOC107727091 other upstream 1226121 3992726 ~ 3996453 (-)
lto1 oraov1 other upstream 1732341 4498946 ~ 4504329 (-)

Expression


Co-expression Network