G175110


Basic Information

Item Value
gene id G175110
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 2729695 ~ 2730873 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU207219
acaacaacaacaaacaacaaaaaatcaggTTACAACAGAATCATTTTAAtacttaaacattatttatacatttagtgacattaataagacaatTCAAAGTGGTTATGCTTTGCTTCACACTGGTGCTTTTGCAGCGGTGAATAAACACATATTCTCTGTCCAATTGTCTTTTAACATTCTGTTGCCatcattaaattttttaaaagacaagCCAGAttgctaatcagaccagagagcgTAAATAAAACGAAAAATCTATAAAAGCCTGTGAAAACTCTGCGCTTTCTGAactaatgtctctagccctgtagctagtctgtGGTCCAATGAGCTACCTTCagataaatcataaatatgatTGTGATGGGAATAGACGATCTTCTACAGAAATCACAAGAGTTGCTGAACTacagacaggttttttttttctttcacacagtGATTGTCATTCAGCTACAGCATTTTTTCAAGTACTCAGCTGAAATACTTGAAATACTGCTTCCACCAGTTGACGACCCTGGTATATAACATAGATCTCTTATTTgtcagtgggaaaaaaaaattatatcccTACAAGAACATCAATCACCTGCCAAACACTTGGCATCTCTTCTTGAGGGACCCTCactcaaagaaaataaataaataaaatttaaaaatgagcaaacCAAGCAAGCAGGTATGCACATACAAGGTCTGAGCCTGTCCGTTAACGTTCTTCTCATCTGTTTACGTTTCTCTTTGGACACCGCAGGCCTGAACGGGGAGCCGTCTGAAAAAGATCCACCGCCTGTTGATTTATCGAGTGCAGGGATTTGCATATCTTTGTAGTACCTCTGTCCGTGTGTTGACCGCTCACTAGGAGGTGTCGGCTCCGAAAATCAATGCCTGgatgtatgttgtgtgtatgcatgtacgTGTGTATacaacacgcacacaccccacagactcacacacaacactgcatCCTGTCacaagggggccaagcacttgaCTGCTCATTGCGCTGATGAAAGTTTATAAGAGCGCATTAGCTGATAAAACAGAATATCCAAGagttctgaatatttttttggttaatCGATTTCATTTTAAGGAatctaagagagagagagagaggggctggtattgatgtgtttgtgtactcAGCATCCCTGCTTACATTGGCTGTGGTGAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU207219 True 1179 lncRNA 0.39 1 2729695 2730873

Neighbor

gene id symbol gene type direction distance location
hnf4b LOC108271394,LOC108429112 coding downstream 413560 2301621 ~ 2316135 (-)
marveld3 marveld3 coding downstream 547310 2178548 ~ 2182385 (-)
LOC113536684 znf821 coding downstream 657422 2054212 ~ 2072273 (-)
LOC113536364 LOC108271342 coding downstream 719073 1996794 ~ 2010622 (-)
tp53i11a tp53i11,tp53i11a,LOC107687052,LOC108435353,LOC107671372 coding downstream 750016 1936826 ~ 1979679 (-)
dhx38 dhx38,LOC106562086,LOC106587179 coding upstream 245586 2976459 ~ 2997108 (-)
LOC113536623 LOC108270986,LOC105889116,LOC107659108 coding upstream 273062 3003935 ~ 3008616 (-)
zgc:162592 LOC108270985 coding upstream 289681 3020554 ~ 3023480 (-)
cpne7 cpne7,LOC107715467,LOC107738346 coding upstream 345105 3075978 ~ 3128645 (-)
rpl13 rpl13 coding upstream 405563 3136436 ~ 3141997 (-)
G175109 NA non-coding downstream 3942 2725094 ~ 2725753 (-)
G175050 NA non-coding downstream 21812 2613845 ~ 2707883 (-)
G175102 NA non-coding downstream 115926 2612943 ~ 2613769 (-)
G175101 NA non-coding downstream 116780 2612448 ~ 2612915 (-)
G175100 NA non-coding downstream 118138 2610074 ~ 2611557 (-)
G175045 zfhx3,LOC107738341,LOC107659104 non-coding upstream 25959 2756832 ~ 2759826 (-)
G175046 NA non-coding upstream 29337 2760210 ~ 2766605 (-)
G175213 NA non-coding upstream 276131 3007004 ~ 3007662 (-)
G175329 NA non-coding upstream 474384 3205257 ~ 3205466 (-)
G175330 NA non-coding upstream 475878 3206751 ~ 3206971 (-)
G175098 NA other downstream 126484 2602414 ~ 2603211 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other downstream 707464 2014722 ~ 2022231 (-)
cd82a cd82 other downstream 796473 1856883 ~ 1933222 (-)
G174247 fbxo22 other downstream 1670461 1057656 ~ 1059234 (-)
fbxl8 fbxl8 other downstream 1726663 999059 ~ 1003032 (-)
G175048 zfhx3,LOC107679901,LOC107565374,LOC107738341 other upstream 23482 2754355 ~ 2756525 (-)
serf2 NA other upstream 818992 3549865 ~ 3581987 (-)
G175497 NA other upstream 838468 3569341 ~ 3572262 (-)
mical2a mical2 other upstream 1120974 3851847 ~ 3909893 (-)
bola3 bola3,LOC107686851,LOC107727091 other upstream 1261853 3992726 ~ 3996453 (-)

Expression


Co-expression Network