G175213


Basic Information

Item Value
gene id G175213
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3007004 ~ 3007662 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU207332
ctgaagttaaaaaaaaacagaaatggagaaagtaaaaaaaaatggtgtaaaaacataaagtaaaatgtcaaaaatatcataaaatgGCATAAAAACGTCATGAAATTGtgccaaaaaaacataaaatgttgtaaaaatgtgaacttaaaatggagtaaaaacataaaattgtgttaaaacatcaagtaaaatgaaaatggtgaaaaaaaaactggcgtcaaatttcataaaatgtcataaaaatgtagaatgacaatgatgtaaaaacattaaaactaaaatggtgtaaaaacatcaaacaaaatAGAACGGTGTAAAAAGAAAGTTATAttgttgtaaaaaaaagttttctaaaACACTGTTGTCCAAAATTATACACATATGGTTCggttgttctttaaaaaaaaagaaagtatgattaataatataaatattgcaGATTTTCTAATgccttattcatttttttatttcataccTCACACTAACGCTGGGCGATATGATCTATATGATACatatactgtgataaattatggcATGACacgcttttctgagatatttataattaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU207332 True 584 lncRNA 0.24 2 3007004 3007662

Neighbor

gene id symbol gene type direction distance location
dhx38 dhx38,LOC106562086,LOC106587179 coding downstream 9896 2976459 ~ 2997108 (-)
hnf4b LOC108271394,LOC108429112 coding downstream 690869 2301621 ~ 2316135 (-)
marveld3 marveld3 coding downstream 824619 2178548 ~ 2182385 (-)
LOC113536684 znf821 coding downstream 934731 2054212 ~ 2072273 (-)
LOC113536364 LOC108271342 coding downstream 996382 1996794 ~ 2010622 (-)
zgc:162592 LOC108270985 coding upstream 12892 3020554 ~ 3023480 (-)
cpne7 cpne7,LOC107715467,LOC107738346 coding upstream 68316 3075978 ~ 3128645 (-)
rpl13 rpl13 coding upstream 128774 3136436 ~ 3141997 (-)
LOC113536793 NA coding upstream 131165 3138827 ~ 3138907 (-)
LOC113536794 NA coding upstream 132408 3140070 ~ 3140161 (-)
G175046 NA non-coding downstream 240399 2760210 ~ 2766605 (-)
G175045 zfhx3,LOC107738341,LOC107659104 non-coding downstream 247178 2756832 ~ 2759826 (-)
G175110 NA non-coding downstream 276131 2729695 ~ 2730873 (-)
G175109 NA non-coding downstream 281251 2725094 ~ 2725753 (-)
G175050 NA non-coding downstream 299121 2613845 ~ 2707883 (-)
G175329 NA non-coding upstream 197595 3205257 ~ 3205466 (-)
G175330 NA non-coding upstream 199089 3206751 ~ 3206971 (-)
G175333 NA non-coding upstream 202485 3210147 ~ 3210404 (-)
G175483 NA non-coding upstream 504329 3511991 ~ 3512232 (-)
LOC113536694 NA non-coding upstream 564996 3572658 ~ 3577973 (-)
G175048 zfhx3,LOC107679901,LOC107565374,LOC107738341 other downstream 250479 2754355 ~ 2756525 (-)
G175098 NA other downstream 403793 2602414 ~ 2603211 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other downstream 984773 2014722 ~ 2022231 (-)
cd82a cd82 other downstream 1073782 1856883 ~ 1933222 (-)
G174247 fbxo22 other downstream 1947770 1057656 ~ 1059234 (-)
serf2 NA other upstream 542203 3549865 ~ 3581987 (-)
G175497 NA other upstream 561679 3569341 ~ 3572262 (-)
mical2a mical2 other upstream 844185 3851847 ~ 3909893 (-)
bola3 bola3,LOC107686851,LOC107727091 other upstream 985064 3992726 ~ 3996453 (-)
lto1 oraov1 other upstream 1491284 4498946 ~ 4504329 (-)

Expression


Co-expression Network