G175329


Basic Information

Item Value
gene id G175329
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3205257 ~ 3205466 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU207459
aaaaaaaactggccttAACAAAAGTGTATGAGAAGTctctgagaaaacctgttttctcttgtttgtgtgtggatgcgcctcttgtcagtcatttcatAGGCACGTTACTCTACGGGCCGtcgtagatcctgggggcggagctttgtgaacatgaaCGGGATTCATTCAAATCTCGAACGTATCTAACCGTTAGAGACAGAATCTTGGGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU207459 True 210 lncRNA 0.45 1 3205257 3205466

Neighbor

gene id symbol gene type direction distance location
kars1 kars,LOC102775760 coding downstream 37978 3155541 ~ 3167279 (-)
gcshb LOC108270992 coding downstream 53146 3144782 ~ 3152111 (-)
rpl13 rpl13 coding downstream 63260 3136436 ~ 3141997 (-)
LOC113536794 NA coding downstream 65096 3140070 ~ 3140161 (-)
LOC113536793 NA coding downstream 66350 3138827 ~ 3138907 (-)
pkd1l2b NA coding upstream 28604 3234070 ~ 3252896 (-)
LOC113536785 NA coding upstream 62978 3268444 ~ 3269415 (-)
LOC113536784 LOC108270651,LOC108276727 coding upstream 71397 3276863 ~ 3277834 (-)
LOC113536796 NA coding upstream 95673 3301139 ~ 3301270 (-)
gli2b LOC108271154 coding upstream 181698 3387164 ~ 3469814 (-)
G175213 NA non-coding downstream 197595 3007004 ~ 3007662 (-)
G175046 NA non-coding downstream 438652 2760210 ~ 2766605 (-)
G175045 zfhx3,LOC107738341,LOC107659104 non-coding downstream 445431 2756832 ~ 2759826 (-)
G175110 NA non-coding downstream 474384 2729695 ~ 2730873 (-)
G175109 NA non-coding downstream 479504 2725094 ~ 2725753 (-)
G175330 NA non-coding upstream 1285 3206751 ~ 3206971 (-)
G175333 NA non-coding upstream 4681 3210147 ~ 3210404 (-)
G175483 NA non-coding upstream 306525 3511991 ~ 3512232 (-)
LOC113536694 NA non-coding upstream 367192 3572658 ~ 3577973 (-)
G175610 NA non-coding upstream 587071 3792537 ~ 3819530 (-)
G175048 zfhx3,LOC107679901,LOC107565374,LOC107738341 other downstream 448732 2754355 ~ 2756525 (-)
G175098 NA other downstream 602046 2602414 ~ 2603211 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other downstream 1183026 2014722 ~ 2022231 (-)
cd82a cd82 other downstream 1272035 1856883 ~ 1933222 (-)
G174247 fbxo22 other downstream 2146023 1057656 ~ 1059234 (-)
serf2 NA other upstream 344399 3549865 ~ 3581987 (-)
G175497 NA other upstream 363875 3569341 ~ 3572262 (-)
mical2a mical2 other upstream 646381 3851847 ~ 3909893 (-)
bola3 bola3,LOC107686851,LOC107727091 other upstream 787260 3992726 ~ 3996453 (-)
lto1 oraov1 other upstream 1293480 4498946 ~ 4504329 (-)

Expression


Co-expression Network