G175330


Basic Information

Item Value
gene id G175330
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3206751 ~ 3206971 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU207460
GCGGTTGATAAACGCtctctgtgtgtaatgtgttactGGTGGGTTTTGAGCGAGACGATGCCTGCAGCCGTGACTCACTTGCCCCACTCATTCATTTTCTTGCATTTAGTCTTCGTTTGTTTAGTAATCGTGAATTTAACATTCAGTacgtaatatttaatatttgtttaggACAAATTTGGGCCTTCTCACCACAGGTGGGTGTttgagtcatttttaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU207460 True 221 lncRNA 0.40 1 3206751 3206971

Neighbor

gene id symbol gene type direction distance location
kars1 kars,LOC102775760 coding downstream 39472 3155541 ~ 3167279 (-)
gcshb LOC108270992 coding downstream 54640 3144782 ~ 3152111 (-)
rpl13 rpl13 coding downstream 64754 3136436 ~ 3141997 (-)
pkd1l2b NA coding upstream 27099 3234070 ~ 3252896 (-)
LOC113536785 NA coding upstream 61473 3268444 ~ 3269415 (-)
LOC113536784 LOC108270651,LOC108276727 coding upstream 69892 3276863 ~ 3277834 (-)
LOC113536796 NA coding upstream 94168 3301139 ~ 3301270 (-)
gli2b LOC108271154 coding upstream 180193 3387164 ~ 3469814 (-)
G175329 NA non-coding downstream 1285 3205257 ~ 3205466 (-)
G175213 NA non-coding downstream 199089 3007004 ~ 3007662 (-)
G175046 NA non-coding downstream 440146 2760210 ~ 2766605 (-)
G175045 zfhx3,LOC107738341,LOC107659104 non-coding downstream 446925 2756832 ~ 2759826 (-)
G175110 NA non-coding downstream 475878 2729695 ~ 2730873 (-)
G175333 NA non-coding upstream 3176 3210147 ~ 3210404 (-)
G175483 NA non-coding upstream 305020 3511991 ~ 3512232 (-)
LOC113536694 NA non-coding upstream 365687 3572658 ~ 3577973 (-)
G175610 NA non-coding upstream 585566 3792537 ~ 3819530 (-)
G175611 NA non-coding upstream 588708 3795679 ~ 3795925 (-)
G175048 zfhx3,LOC107679901,LOC107565374,LOC107738341 other downstream 450226 2754355 ~ 2756525 (-)
G175098 NA other downstream 603540 2602414 ~ 2603211 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other downstream 1184520 2014722 ~ 2022231 (-)
cd82a cd82 other downstream 1273529 1856883 ~ 1933222 (-)
G174247 fbxo22 other downstream 2147517 1057656 ~ 1059234 (-)
serf2 NA other upstream 342894 3549865 ~ 3581987 (-)
G175497 NA other upstream 362370 3569341 ~ 3572262 (-)
mical2a mical2 other upstream 644876 3851847 ~ 3909893 (-)
bola3 bola3,LOC107686851,LOC107727091 other upstream 785755 3992726 ~ 3996453 (-)
lto1 oraov1 other upstream 1291975 4498946 ~ 4504329 (-)

Expression


Co-expression Network