G175483


Basic Information

Item Value
gene id G175483
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3511991 ~ 3512232 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU207646
gtcgtggcctaatggatagagagtcggacttacaacccaaaggtgaacccgaaggttgtgggttcaagtctccggtccagcagggattgtaggtggggggagtgaatgaccagtgccctctcccaccctcaataccacgactgaggtgagacccttgagcaaggcactgaacccccaactgctccccgggcaccacagcaaaaaaaggctgcccactgctgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

RNA

RNA id representative length rna type GC content exon number start site end site
TU207646 True 242 lncRNA 0.57 1 3511991 3512232

Neighbor

gene id symbol gene type direction distance location
gli2b LOC108271154 coding downstream 42177 3387164 ~ 3469814 (-)
LOC113536796 NA coding downstream 210721 3301139 ~ 3301270 (-)
LOC113536784 LOC108270651,LOC108276727 coding downstream 234157 3276863 ~ 3277834 (-)
LOC113536785 NA coding downstream 242576 3268444 ~ 3269415 (-)
pkd1l2b NA coding downstream 259095 3234070 ~ 3252896 (-)
LOC113536512 inhbb,LOC108270543,LOC108411664,LOC101887111,LOC107713002 coding upstream 43098 3555330 ~ 3561755 (-)
frmd5 frmd5,LOC108441847,LOC107670731,LOC107586052 coding upstream 74145 3586377 ~ 3605995 (-)
tmed3 LOC108271219,LOC108441851 coding upstream 93913 3606145 ~ 3610869 (-)
znf710b znf710b,LOC108270981,LOC108444484,LOC107593042,LOC107700425,LOC107741417,LOC107585980,LOC107670757 coding upstream 113191 3625423 ~ 3640960 (-)
arntl1b arntl,arntl1a,LOC108270977,LOC105895625,LOC108439331 coding upstream 147152 3659384 ~ 3679257 (-)
G175333 NA non-coding downstream 301587 3210147 ~ 3210404 (-)
G175330 NA non-coding downstream 305020 3206751 ~ 3206971 (-)
G175329 NA non-coding downstream 306525 3205257 ~ 3205466 (-)
G175213 NA non-coding downstream 504329 3007004 ~ 3007662 (-)
G175046 NA non-coding downstream 745386 2760210 ~ 2766605 (-)
LOC113536694 NA non-coding upstream 60426 3572658 ~ 3577973 (-)
G175610 NA non-coding upstream 280305 3792537 ~ 3819530 (-)
G175611 NA non-coding upstream 283447 3795679 ~ 3795925 (-)
G175676 NA non-coding upstream 410081 3922313 ~ 3922941 (-)
G175767 NA non-coding upstream 563912 4076144 ~ 4137879 (-)
G175048 zfhx3,LOC107679901,LOC107565374,LOC107738341 other downstream 755466 2754355 ~ 2756525 (-)
G175098 NA other downstream 908780 2602414 ~ 2603211 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other downstream 1489760 2014722 ~ 2022231 (-)
cd82a cd82 other downstream 1578769 1856883 ~ 1933222 (-)
G174247 fbxo22 other downstream 2452757 1057656 ~ 1059234 (-)
serf2 NA other upstream 37633 3549865 ~ 3581987 (-)
G175497 NA other upstream 57109 3569341 ~ 3572262 (-)
mical2a mical2 other upstream 339615 3851847 ~ 3909893 (-)
bola3 bola3,LOC107686851,LOC107727091 other upstream 480494 3992726 ~ 3996453 (-)
lto1 oraov1 other upstream 986714 4498946 ~ 4504329 (-)

Expression


Co-expression Network