serf2


Basic Information

Item Value
gene id serf2
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3549865 ~ 3581987 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU207665
ACGATGATTGGCTAACACAGAACATGGAGGCGGGACAAACAGCCACAGCTCGCGCAACCAGGAACGCCATTAGCGCTTCATAGCTACAGCGAAGGAAAAGGCTTTAGGCTTCGCTTTGCCCGGATTTAAAAAAGCACCGAAAGTCATGACCAGAGGAAACCAGCGTGAACTTGCCCGACAGAAGAATGCCAAGAAGCAAAATGAGCAGACCAAGGGCAGGAAGGATGATGGTCTCTCCGCTGCTGCTCGCAAGCAGAGGGATGCAGAGATAATGcagcagaaacagaagaaagCCAACGAAAAGCCGGACCCTAAATCGAAATAACCAGTGGGACACATTGGGAACAGCATGCATTTTTGCAGAGGTTCCCAATCTTCAGACTTCAGCTCGCGGCTCACGAAATGTTGTAACCATATAGACAGCTAAAAATTACTGACTTTGGTAATCGGTCGGAGAAAATAGTCTACAATGTGGCTTCAGAAAGATCTCACTTATGAGGGAAAATCTTTGAGTTAAGTAATGATTCATCCATTGTTCCAAATATAATCAGTACACGCAATGAATATGTCAAATGATATGTAAATTGGCTTAATCGTATTTTTAACTAGTTAAAAATATTGACGTGTCGTTCCACCACATGTTAAAAGCAACTGTGTTACTGATAATTCTTGGTTCAAGTGTCATGAGATTGCATCTTAATCTTCCATCTTGTGTCTCCTTTTGATTTCACGTCACCTTTGAGTGTGTACTAGATATGGAGCAGATCATTTTAAAGAGGGAGACTTCCAGTCAACATATGAATTGACTTTCgagtttctgtatttttgtattaaacaCCCTtaataaactgtacatttttaaactgatttttttttttttttttttttttttttttgcacaatcatattttttcatgtttttttttgtttttt
>XM_026930341.2
CATGCGCAGTCCGTGTACGATGATTGGCTAACACAGAACATGGAGGCGGGACAAACAGCCACAGCTCGCGCAACCAGGAACGCCATTAGCGCTTCATAGCTACAGCGAAGGAAAAGGCTTTAGGCTTCGCTTTGCCCGGATTTAAAAAAGCACCGAAAGTCATGACCAGAGGAAACCAGCGTGAACTTGCCCGACAGAAGAATGCCAAGAAGCAAAATGAGCAGACCAAGGGCAGGAAGGATGATGGTCTCTCCGCTGCTGCTCGCAAGCAGAGGGATGCAGAGATAATGcagcagaaacagaagaaagCCAACGAAAAGCCGGACCCTAAATCGAAATAACCAGTGGGACACATTGGGAACAGCATGCATTTTTGCAGAGGTTCCCAATCTTCAGACTTCAGCTCGCGGCTCACGAAATGTTGTAACCATATAGACAGCTAAAAATTACTGACTTTGGTAATCGGTCGGAGAAAATAGTCTACAATGTGGCTTCAGAAAGATCTCACTTATGAGGGAAAATCTTTGAGTTAAGTAATGATTCATCCATTGTTCCAAATATAATCAGTACACGCAATGAATATGTCAAATGATATGTAAATTGGCTTAATCGTATTTTTAACTAGTTAAAAATATTGACGTGTCGTTCCACCACATGTTAAAAGCAACTGTGTTACTGATAATTCTTGGTTCAAGTGTCATGAGATTGCATCTTAATCTTCCATCTTGTGTCTCCTTTTGATTTCACGTCACCTTTGAGTGTGTACTAGATATGGAGCAGATCATTTTAAAGAGGGAGACTTCCAGTCAACATATGAATTGACTTTCgagtttctgtatttttgtattaaacaCCCTtaataaactgtacatttttaaactga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU207665 True 933 lncRNA 0.39 4 3549865 3581971
XM_026930341.2 False 883 mRNA 0.42 3 3579975 3581987

Neighbor

gene id symbol gene type direction distance location
gli2b LOC108271154 coding downstream 80051 3387164 ~ 3469814 (-)
LOC113536796 NA coding downstream 248595 3301139 ~ 3301270 (-)
LOC113536784 LOC108270651,LOC108276727 coding downstream 272031 3276863 ~ 3277834 (-)
LOC113536785 NA coding downstream 280450 3268444 ~ 3269415 (-)
pkd1l2b NA coding downstream 296969 3234070 ~ 3252896 (-)
frmd5 frmd5,LOC108441847,LOC107670731,LOC107586052 coding upstream 4390 3586377 ~ 3605995 (-)
tmed3 LOC108271219,LOC108441851 coding upstream 24158 3606145 ~ 3610869 (-)
znf710b znf710b,LOC108270981,LOC108444484,LOC107593042,LOC107700425,LOC107741417,LOC107585980,LOC107670757 coding upstream 43436 3625423 ~ 3640960 (-)
arntl1b arntl,arntl1a,LOC108270977,LOC105895625,LOC108439331 coding upstream 77397 3659384 ~ 3679257 (-)
rassf10b LOC108270549 coding upstream 153759 3735746 ~ 3737554 (-)
G175483 NA non-coding downstream 37633 3511991 ~ 3512232 (-)
G175333 NA non-coding downstream 339461 3210147 ~ 3210404 (-)
G175330 NA non-coding downstream 342894 3206751 ~ 3206971 (-)
G175329 NA non-coding downstream 344399 3205257 ~ 3205466 (-)
G175213 NA non-coding downstream 542203 3007004 ~ 3007662 (-)
G175610 NA non-coding upstream 210550 3792537 ~ 3819530 (-)
G175611 NA non-coding upstream 213692 3795679 ~ 3795925 (-)
G175676 NA non-coding upstream 340326 3922313 ~ 3922941 (-)
G175767 NA non-coding upstream 494157 4076144 ~ 4137879 (-)
G175775 NA non-coding upstream 501985 4083972 ~ 4086193 (-)
G175048 zfhx3,LOC107679901,LOC107565374,LOC107738341 other downstream 793340 2754355 ~ 2756525 (-)
G175098 NA other downstream 946654 2602414 ~ 2603211 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other downstream 1527634 2014722 ~ 2022231 (-)
cd82a cd82 other downstream 1616643 1856883 ~ 1933222 (-)
G174247 fbxo22 other downstream 2490631 1057656 ~ 1059234 (-)
mical2a mical2 other upstream 269860 3851847 ~ 3909893 (-)
bola3 bola3,LOC107686851,LOC107727091 other upstream 410739 3992726 ~ 3996453 (-)
lto1 oraov1 other upstream 916959 4498946 ~ 4504329 (-)
G176307 NA other upstream 1497830 5079817 ~ 5080895 (-)
trip4 trip4 other upstream 1557623 5139610 ~ 5196818 (-)

Expression


Co-expression Network