G175497


Basic Information

Item Value
gene id G175497
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3569341 ~ 3572262 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU207666
GTACTAAACAAATAGGGTTTATTTGGTCTGTTATCAACATacagtgaatcagtgaaaaGCAATTCATACAAAAAGTGACTCAATTACAAAAATATGGTTACCACAAAAACTTGTGGTTTATACTAAAAGCAATATATGTGGTAGGCTTTGCATAGTGAAGTCTTTGAAAACACTAATACACAACACAGCAGTATTACAACAAGCAGCGTTCCTCAGATAGCTGTACAATATGCTATTAGCGTTGTTCTATACATTTGACTCCCATTATAAAGATAACCGGGTCATCTTGCTTCATTTAATACCCCATAGCACTGCATTCAACAACAGCCCATCACTACAGAGTGTTCAAAGTATTACACGCTCGTTTCCCCATTTTTACAATGAACTCTGTACGACGAAGCTCATAGGAAGGCAGGTTCAGATTGTTTTCCTTCAAGGCGCTGCATCAATCAGCAAAGACTCGTCTAATCTAAACACATATTGATCAAATTAATCTAACGTAATATGGTTGTTGCTAAACTAGGTGTGGTTCATTTTAAAACGATACAGTTCATCTCTTTAAATAGTGCTGATGGTGTGAAAAGTATTGAGCTAATAGAAGATGAAATGCAGTAGTGGTAAATATTAATGCTTATAAACAAGTGAGTACTCTACAAACATTACTGCATAAATTTTATGTATGTAACAACCAATGACACTTTGCCAAATTTCAAATGCCTGAGAGAGCAAGTTGTTATAATATGgcaaaataactgcatgaatgtccATCTAGTTGGATCTTATTTGTCTGATGGCAGAAGAAATAAATTCGGATATGAAAATCATAATGGATGACTGTTGCATAAACCTCACTGGATACAGCAAGGAAGAACAATGGCATCCGTTCACAGTTCTTTACTCTGTCTGGATTTGGCAATGTTAACCACAATAGTGGAAAACCAGCTTTCAGGTTTTCCGTGTCCACCAGAAAGGCGTTGTGCAGGGAAAGGCTTGCTCTTCACTGTTCTTCTGACTCAAAGCAATGTGCAGCGCTCTTTCaggctttttttcttcttgccgcttttcttgccatttttgtctttgttctCAGCCATCTTCTTAGCCCGCACCTCTCTCATGAGGTCAAAAAAACCTTATCAACGTTGGCACGTGTTTTTGCTGAGGTTTCCACATACTGCACTCCCCATTCATCTGCTTTTTCCCTGGCCCCGGTCACAGAAACCTGCCTCTTGTCCTCCAGATCAGATTTATTTCCCACTAACAACAGAGGAATCTTATCCTCCTCTGCCTTCACACGCAGGATCT

Function

GO:

id name namespace
GO:0071855 neuropeptide receptor binding molecular_function
GO:0031841 neuropeptide Y receptor binding molecular_function
GO:0031843 type 2 neuropeptide Y receptor binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU207666 True 1305 TUCP 0.39 2 3569341 3572262

Neighbor

gene id symbol gene type direction distance location
LOC113536512 inhbb,LOC108270543,LOC108411664,LOC101887111,LOC107713002 coding downstream 7586 3555330 ~ 3561755 (-)
gli2b LOC108271154 coding downstream 99527 3387164 ~ 3469814 (-)
LOC113536796 NA coding downstream 268071 3301139 ~ 3301270 (-)
LOC113536784 LOC108270651,LOC108276727 coding downstream 291507 3276863 ~ 3277834 (-)
LOC113536785 NA coding downstream 299926 3268444 ~ 3269415 (-)
frmd5 frmd5,LOC108441847,LOC107670731,LOC107586052 coding upstream 14115 3586377 ~ 3605995 (-)
tmed3 LOC108271219,LOC108441851 coding upstream 33883 3606145 ~ 3610869 (-)
znf710b znf710b,LOC108270981,LOC108444484,LOC107593042,LOC107700425,LOC107741417,LOC107585980,LOC107670757 coding upstream 53161 3625423 ~ 3640960 (-)
arntl1b arntl,arntl1a,LOC108270977,LOC105895625,LOC108439331 coding upstream 87122 3659384 ~ 3679257 (-)
rassf10b LOC108270549 coding upstream 163484 3735746 ~ 3737554 (-)
G175483 NA non-coding downstream 57109 3511991 ~ 3512232 (-)
G175333 NA non-coding downstream 358937 3210147 ~ 3210404 (-)
G175330 NA non-coding downstream 362370 3206751 ~ 3206971 (-)
G175329 NA non-coding downstream 363875 3205257 ~ 3205466 (-)
G175213 NA non-coding downstream 561679 3007004 ~ 3007662 (-)
LOC113536694 NA non-coding upstream 396 3572658 ~ 3577973 (-)
G175610 NA non-coding upstream 220275 3792537 ~ 3819530 (-)
G175611 NA non-coding upstream 223417 3795679 ~ 3795925 (-)
G175676 NA non-coding upstream 350051 3922313 ~ 3922941 (-)
G175767 NA non-coding upstream 503882 4076144 ~ 4137879 (-)
G175048 zfhx3,LOC107679901,LOC107565374,LOC107738341 other downstream 812816 2754355 ~ 2756525 (-)
G175098 NA other downstream 966130 2602414 ~ 2603211 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other downstream 1547110 2014722 ~ 2022231 (-)
cd82a cd82 other downstream 1636119 1856883 ~ 1933222 (-)
G174247 fbxo22 other downstream 2510107 1057656 ~ 1059234 (-)
mical2a mical2 other upstream 279585 3851847 ~ 3909893 (-)
bola3 bola3,LOC107686851,LOC107727091 other upstream 420464 3992726 ~ 3996453 (-)
lto1 oraov1 other upstream 926684 4498946 ~ 4504329 (-)
G176307 NA other upstream 1507555 5079817 ~ 5080895 (-)
trip4 trip4 other upstream 1567348 5139610 ~ 5196818 (-)

Expression


Co-expression Network