bola3 (bola3,LOC107686851,LOC107727091)


Basic Information

Item Value
gene id bola3
gene name bola3,LOC107686851,LOC107727091
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3992726 ~ 3996453 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU207939
ACAACAACAGACGTCCGGGCATGACTTTTCCCATCGAGATATTAGGCGCACCGTGaagaattttgttttgttttgttttgtttaatgatATCAGTCGGTGTAGTAGTCAGGTCCGGGATGTCTCTTCACAGACTACTAAGATGCAAAACTCTTCATGCAGTATCGtggagacagacacagaggtcTTTTTCGACCAGCACAGAAGGAGAGATCCACATTACCAAAGTACTGAAGGAGAAGTTTCCCCAAGCCTCATCTCTCAAAGTTGTGGATATATCTGGCGGCTGCGGAGCGATGTATGAAATCCACATCGAGTCAGATGAATTCAGAGGGAAAAGAATAGTACAGCAGCACCAGTTAGTGAATCAGGCACTCAAAGAAGAGATTAAAGGAATGCACGGACTGCGGATCTTCACGGATGTCCCAAAGAAGTAGAATCTGCACTAGAGTTCTTCACATCACCAAGCCCAGATTCAAGCTGGAAACTGGTGCCATTTGTTAGACCTGATTATCACATATGAAGatatattttaagtatttacaGATAAACTATTACATGATATTTAAAGAAGCTGGAAACATCTAGGAaaccttttaaggaaaagggttaatgggcctcatttatcaatcatttaatacagctgtgtgtaaatttttGTAGGTTAGaccaaactaaaaattcctgccagatttacaaaagattcagattttctttgtactcacaTGCGTATGTCGATAATACCAGTCAGACGTAAATTACCAAGTGTGCTCACGACAAAGCTGATTTACAgttagtgatgcccacaaaaagctcacagagctaaaaatgaccaaaaatgatgactaaacggtgaaagagtGCCTCCCAAGTGTGGcatgcactaaatcttccagtattTCAGCTTTACCACTGCAGCGCATCAGCCACTATACTCACAATAACACTTCCCCCGTGTAGAGGGTGTCATTACTTTTGTAATGTAACCTGattgaatggctagtcttactcatcttaatttatggatatTGTGGACTGTTTTCTTTACATCGTTAATCTGAAATGACTAAATTTCACATtcaaataagcaatttaaactttaCCACGTAATTCGTATCTATAGAATTGCAATTGTATGATTTGAAGCCCATCAGTCGAggttagtgagtctccttatacatttacacaaactccTAGGATATGAAAGTTTTTTCAAACTAAgtggattttcatgaattttcAACCACATTTCATGTGTAAATGCTCCGGTGAAAGATTTAGTTATAAATtctttgtatccagcttgatcaatgaggcccattgttgtTGGAATTCTACAGTACGCACAAAATGTGACTTGAATGCTGCAATGCGCACAAAAATGACACAATATCACAAAGCCACTGATGTAGCCTGAGAAAACGACCTAGAAAGCAACTAAGAATAGCTGTTAGCGTTATTCACTGATACACCAATGATACTTGACTAAACGTAAATAATTGCTTTCAAACACTATTGcgtttgttattatttatgacacttctgtgtttttctctgtgcTTTGATTAGGATGATTAGGAACTGAAAGCCATTAAATCCACTTCCTTTTCAGTTGTCATTTCTTTGTGATTGTCTTCATTCTTATTCACTCTATGATCATATAGTATGGATCCTGgaaaaatataatgtgtgtgcacTGATAAAACAGATTATGTAATCATGGACAAACATCATCTTTATTGGATTGAGCATGAAGTTCCTTTGAAATGATGTGAATGACATGTTTATCCACTAGATGTCAGGTTTTTCTTGAAATGTTAATGTTCCTATAAACATGCACTGAACTTATTTTTCATaagaatgaaatgttac
>XM_034308466.1
GCTTACGTCATATTCGTGCGACAACAACAGACGTCCGGGCATGACTTTTCCCATCGAGATATTAGGCGCACCGTGaagaattttgttttgttttgttttgtttaatgatATCAGTCGGTGTAGTAGTCAGGTCCGGGATGTCTCTTCACAGACTACTAAGATGCAAAACTCTTCATGCAGTATCGtggagacagacacagaggtcTTTTTCGACCAGCACAGAAGGAGAGATCCACATTACCAAAGTACTGAAGGAGAAGTTTCCCCAAGCCTCATCTCTCAAAGTTGTGGATATATCTGGCGGCTGCGGAGCGATGTATGAAATCCACATCGAGTCAGATGAATTCAGAGGGAAAAGAATAGTACAGCAGCACCAGTTAGTGAATCAGGCACTCAAAGAAGAGATTAAAGGAATGCACGGACTGCGGATCTTCACGGATGTCCCAAAGAAGTAGAATCTGCACTAGAGTTCTTCACATCACCAAGCCCAGATTCAAGCTGGAAACTGGTGCCATTTGTTAGACCTGATTATCACATATGAAGatatattttaagtatttacaGATAAACTATTACATGATATTTAAAGAAGCTGGAAACATCTAGGAaaccttttaaggaaaagggttaatgggcctcatttatcaatcatttaatacagctgtgtgtaaatttttGTAGGTTAGaccaaactaaaaattcctgccagatttacaaaagattcagattttctttgtactcacaTGCGTATGTCGATAATACCAGTCAGACGTAAATTACCAAGTGTGCTCACGACAAAGCTGATTTACAgttagtgatgcccacaaaaagctcacagagctaaaaatgaccaaaaatgatgactaaacggtgaaagagtGCCTCCCAAGTGTGGcatgcactaaatcttccagtattTCAGCTTTACCACTGCAGCGCATCAGCCACTATACTCACAATAACACTTCCCCCGTGTAGAGGGTGTCATTACTTTTGTAATGTAACCTGattgaatggctagtcttactcatcttaatttatggatatTGTGGACTGTTTTCTTTACATCGTTAATCTGAAATGACTAAATTTCACATtcaaataagcaatttaaactttaCCACGTAATTCGTATCTATAGAATTGCAATTGTATGATTTGAAGCCCATCAGTCGAggttagtgagtctccttatacatttacacaaactccTAGGATATGAAAGTTTTTTCAAACTAAgtggattttcatgaattttcAACCACATTTCATGTGTAAATGCTCCGGTGAAAGATTTAGTTATAAATtctttgtatccagcttgatcaatgaggcccattgttgtTGGAATTCTACAGTACGCACAAAATGTGACTTGAATGCTGCAATGCGCACAAAAATGACACAATATCACAAAGCCACTGATGTAGCCTGAGAAAACGACCTAGAAAGCAACTAAGAATAGCTGTTAGCGTTATTCACTGATACACCAATGATACTTGACTAAACGTAAATAATTGCTTTCAAACACTATTGcgtttgttattatttatgacacttctgtgtttttctctgtgcTTTGATTAGGATGATTAGGAACTGAAAGCCATTAAATCCACTTCCTTTTCAGTTGT
>XM_034308467.1
GCTTACGTCATATTCGTGCGACAACAACAGACGTCCGGGCATGACTTTTCCCATCGAGATATTAGGCGCACCGTGaagaattttgttttgttttgttttgtttaatgatATCAGTCGGTGTAGTAGTCAGGTCCGGGATGTCTCTTCACAGACTACTAAGATGCAAATACAGTTTAATCATTGTCACTGGCACATGCAGACTCTTCATGCAGTATCGtggagacagacacagaggtcTTTTTCGACCAGCACAGAAGGAGAGATCCACATTACCAAAGTACTGAAGGAGAAGTTTCCCCAAGCCTCATCTCTCAAAGTTGTGGATATATCTGGCGGCTGCGGAGCGATGTATGAAATCCACATCGAGTCAGATGAATTCAGAGGGAAAAGAATAGTACAGCAGCACCAGTTAGTGAATCAGGCACTCAAAGAAGAGATTAAAGGAATGCACGGACTGCGGATCTTCACGGATGTCCCAAAGAAGTAGAATCTGCACTAGAGTTCTTCACATCACCAAGCCCAGATTCAAGCTGGAAACTGGTGCCATTTGTTAGACCTGATTATCACATATGAAGatatattttaagtatttacaGATAAACTATTACATGATATTTAAAGAAGCTGGAAACATCTAGGAaaccttttaaggaaaagggttaatgggcctcatttatcaatcatttaatacagctgtgtgtaaatttttGTAGGTTAGaccaaactaaaaattcctgccagatttacaaaagattcagattttctttgtactcacaTGCGTATGTCGATAATACCAGTCAGACGTAAATTACCAAGTGTGCTCACGACAAAGCTGATTTACAgttagtgatgcccacaaaaagctcacagagctaaaaatgaccaaaaatgatgactaaacggtgaaagagtGCCTCCCAAGTGTGGcatgcactaaatcttccagtattTCAGCTTTACCACTGCAGCGCATCAGCCACTATACTCACAATAACACTTCCCCCGTGTAGAGGGTGTCATTACTTTTGTAATGTAACCTGattgaatggctagtcttactcatcttaatttatggatatTGTGGACTGTTTTCTTTACATCGTTAATCTGAAATGACTAAATTTCACATtcaaataagcaatttaaactttaCCACGTAATTCGTATCTATAGAATTGCAATTGTATGATTTGAAGCCCATCAGTCGAggttagtgagtctccttatacatttacacaaactccTAGGATATGAAAGTTTTTTCAAACTAAgtggattttcatgaattttcAACCACATTTCATGTGTAAATGCTCCGGTGAAAGATTTAGTTATAAATtctttgtatccagcttgatcaatgaggcccattgttgtTGGAATTCTACAGTACGCACAAAATGTGACTTGAATGCTGCAATGCGCACAAAAATGACACAATATCACAAAGCCACTGATGTAGCCTGAGAAAACGACCTAGAAAGCAACTAAGAATAGCTGTTAGCGTTATTCACTGATACACCAATGATACTTGACTAAACGTAAATAATTGCTTTCAAACACTATTGcgtttgttattatttatgacacttctgtgtttttctctgtgcTTTGATTAGGATGATTAGGAACTGAAAGCCATTAAATCCACTTCCTTTTCAGTTGT

Function

symbol description
bola3 Human ortholog(s) of this gene implicated in multiple mitochondrial dysfunctions syndrome 2. Orthologous to human BOLA3 (bolA family member 3).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU207939 True 1870 TUCP 0.37 4 3992726 3996433
XM_034308466.1 False 1634 mRNA 0.38 4 3992982 3996453
XM_034308467.1 False 1666 mRNA 0.38 4 3992982 3996453

Neighbor

gene id symbol gene type direction distance location
vat1l vat1l,LOC107686810,LOC107730071,LOC106587190,LOC107727106,LOC106562097 coding downstream 3130 3962830 ~ 3989596 (-)
clec3a clec3a coding downstream 32773 3954997 ~ 3959953 (-)
usp47 usp47,LOC107686808 coding downstream 40576 3924247 ~ 3952150 (-)
parvab parva,LOC108271331,LOC106587194 coding downstream 153388 3821236 ~ 3839338 (-)
tead1b tead1,LOC105016886,LOC106587195 coding downstream 180354 3741641 ~ 3812372 (-)
bco1 LOC108271003 coding upstream 610 3997063 ~ 4005076 (-)
bco1l LOC108271004 coding upstream 10955 4007408 ~ 4017932 (-)
ipo7 ipo7,LOC106587545,LOC106562356 coding upstream 43911 4040364 ~ 4060843 (-)
LOC113536792 NA coding upstream 52412 4048865 ~ 4049043 (-)
LOC113536791 NA coding upstream 56136 4052589 ~ 4052767 (-)
G175676 NA non-coding downstream 69785 3922313 ~ 3922941 (-)
G175610 NA non-coding downstream 173196 3792537 ~ 3819530 (-)
G175611 NA non-coding downstream 196801 3795679 ~ 3795925 (-)
LOC113536694 NA non-coding downstream 414753 3572658 ~ 3577973 (-)
G175483 NA non-coding downstream 480494 3511991 ~ 3512232 (-)
G175767 NA non-coding upstream 79691 4076144 ~ 4137879 (-)
G175775 NA non-coding upstream 87519 4083972 ~ 4086193 (-)
G175854 NA non-coding upstream 302524 4298977 ~ 4299868 (-)
G175963 NA non-coding upstream 625675 4622128 ~ 4622987 (-)
G175967 NA non-coding upstream 633895 4630348 ~ 4632785 (-)
mical2a mical2 other downstream 82833 3851847 ~ 3909893 (-)
serf2 NA other downstream 410739 3549865 ~ 3581987 (-)
G175497 NA other downstream 420464 3569341 ~ 3572262 (-)
G175048 zfhx3,LOC107679901,LOC107565374,LOC107738341 other downstream 1236201 2754355 ~ 2756525 (-)
G175098 NA other downstream 1389515 2602414 ~ 2603211 (-)
lto1 oraov1 other upstream 502493 4498946 ~ 4504329 (-)
G176307 NA other upstream 1083364 5079817 ~ 5080895 (-)
trip4 trip4 other upstream 1143157 5139610 ~ 5196818 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other upstream 1699927 5696380 ~ 5708304 (-)
LOC113536608 LOC108270551 other upstream 2860302 6856755 ~ 6861348 (-)

Expression


Co-expression Network