lto1 (oraov1)


Basic Information

Item Value
gene id lto1
gene name oraov1
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 4498946 ~ 4504329 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU208186
TCGTCCTTCCGGAAGCCAGTAGCGTGTTTACTTTATAAGTGCAGTTTCTAAGTAAAATATCAGGATAAATactatatttctgttttattaaaatggcaggtttttcgCATAATGTTTCAGACGACTTGTTCGACTCAATTATAATGGCAGACGACAGGTTCCATGTAGATGGATACCATGAAGGATTTGAGGAAGGAATGCAGCAGGGATTGATCGAGGGCAGAAACCACGGCATGCTTCACGGTGCCAAACTCTCAGCTGAGATGTTAAAGCAAGAAAACGACTGAAAGCTGTTGAGTCATTGAATGCAATGATCCAGAAGTTTCCGTATGAAGACCCACAGTATGAGAACCTCCAGGAACACATGGAAAGAGTGAGAGCCAAGTTTAGACAGGTGTGTTCTTTACTCAGCGTGGCTGCAGACTTCCGTGAGTATGTTTCTGGATCAGAAGGAATGTCATTCTGAAACACTACAGAGGCGAACCCTGCTCTGAGGCGTCCTCCTGCAGTGTACATCACGAGACAACTTCGACTCACAGCCAGCCGAAAAGAGAAGCGAGACACGGTGCAGTTGTGCTGTATATGCAGAGTCAAGGCTTGAGAAGTGAACAGTGGGAATGTTTTTTGGTAAATAATGCTGTGGTGTTAAAGGTCGATGCTTCCTTGTGACCTCATACAGTAAATATGCCAGGAAATGAGTCAGACGATGACTCTTAGGATCTTGGGTTAGTCCTTTTGAGAAGGTGAGTATGTGCTGATCTGTGATCAGTTACTGGTTGACTTTGGCTTTCTGCTTGAATTGGTGTGTGAACACCATCTGGTGGTGAAGGTGGAGAAAACAGAGCCACCAGCAGACATGCTTATGTTAATGGATGCACATCTCCATCTGCTGGAGCAAATCAGAACTAGATtattaacagttttattttacagaatca
>XM_026930851.2
GGAAGAAGTCGTCCTTCCGGAAGCCAGTAGCGTGTTTACTTTATAAGTGCAGTTTCTAAGTAAAATATCAGGATAAATactatatttctgttttattaaaatggcaggtttttcgCATAATGTTTCAGACGACTTGTTCGACTCAATTATAATGGCAGACGACAGGTTCCATGTAGATGGATACCATGAAGGATTTGAGGAAGGAATGCAGCAGGGATTGATCGAGGGCAGAAACCACGGCATGCTTCACGGTGCCAAACTCTCAGCTGAGGTTTCTTTTTATCATGGCTTTGCACTCACATGGAAATGTCTTCTCCAAAACACTGAAGATGTTAAAGCAAGAAAACGACTGAAAGCTGTTGAGTCATTGAATGCAATGATCCAGAAGTTTCCGTATGAAGACCCACAGTATGAGAACCTCCAGGAACACATGGAAAGAGTGAGAGCCAAGTTTAGACAGGTGTGTTCTTTACTCAGCGTGGCTGCAGACTTCCGTGAGTATGTTTCTGGATCAGAAGGAATGTCATTCTGAAACACTACAGAGGCGAACCCTGCTCTGAGGCGTCCTCCTGCAGTGTACATCACGAGACAACTTCGACTCACAGCCAGCCGAAAAGAGAAGCGAGACACGGTGCAGTTGTGCTGTATATGCAGAGTCAAGGCTTGAGAAGTGAACAGTGGGAATGTTTTTTGGTAAATAATGCTGTGGTGTTAAAGGTCGATGCTTCCTTGTGACCTCATACAGTAAATATGCCAGGAAATGAGTCAGACGATGACTCTTAGGATCTTGGGTTAGTCCTTTTGAGAAGGTGAGTATGTGCTGATCTGTGATCAGTTACTGGTTGACTTTGGCTTTCTGCTTGAATTGGTGTGTGAACACCATCTGGTGGTGAAGGTGGAGAAAACAGAGCCACCAGCAGACATGCTTATGTTAATGGATGCACATCTCCATCTGCTGGAGCAAATCAGAACTAGATtattaacagttttattttacagaatcaACACCTATTATACAGCATTTCAACAATATTGCCCTCAGAATTGAGATTTTTCTTAATAGaattacacaaaaatgtttgtgaacATTTGAAGTGTCTTGCgtattattaacaaaataaataaattaatataatgatcAGAAGTGTGGGATATCCAAGAAGGGATTTTGGGTAAGATTGCCAGTTTTGCATGTATCGTTACACTAAGCAAGACGCTTTGAtgatgtaataatttaataactgcATAATTAAGGAACAAAAGATGAtagggcgtgctgttataggaaaataataatcagcAGGGTGGTGCGATGTTAGCAgatcttgaagtgttttatttctgttaaacaacatcaatttgccaacactcaaaatattttatttattacagaacatcATGTCATACTtatatccatttgtagttacctttaaagttgtggaatgcccacaaaacaagttagctcctgttgtCAATTAGATTATGAACCTCTCTaatcaagaaaaaacaaaacaattttgtcgtgttactgagaaa

Function

NR:

description
oral cancer-overexpressed protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU208186 False 938 lncRNA 0.44 5 4499478 4504321
XM_026930851.2 True 1536 mRNA 0.39 5 4498946 4504329

Neighbor

gene id symbol gene type direction distance location
dhcr7 dhcr7,LOC107594471,LOC107686818,LOC107679738 coding downstream 219361 4269174 ~ 4279585 (-)
LOC113536783 NA coding downstream 297036 4192128 ~ 4201910 (-)
LOC113536655 NA coding downstream 317198 4172771 ~ 4181748 (-)
adgrg3 NA coding downstream 339750 4145852 ~ 4159196 (-)
LOC113536798 NA coding downstream 398520 4100371 ~ 4100426 (-)
fgf19 fgf19 coding upstream 5091 4509420 ~ 4512199 (-)
fgf4 fgf4,LOC107686874,LOC107594497,LOC107727109,LOC107584753,LOC107679733 coding upstream 20657 4524986 ~ 4529727 (-)
fgf3 fgf3 coding upstream 32593 4536922 ~ 4541112 (-)
zgc:153993 LOC108270970,LOC105889048 coding upstream 82674 4587003 ~ 4597773 (-)
pacsin3 pacsin3,LOC107686823,LOC107679714 coding upstream 152277 4656606 ~ 4688578 (-)
G175854 NA non-coding downstream 199078 4298977 ~ 4299868 (-)
G175767 NA non-coding downstream 361067 4076144 ~ 4137879 (-)
G175775 NA non-coding downstream 412753 4083972 ~ 4086193 (-)
G175676 NA non-coding downstream 576005 3922313 ~ 3922941 (-)
G175610 NA non-coding downstream 679416 3792537 ~ 3819530 (-)
G175963 NA non-coding upstream 117799 4622128 ~ 4622987 (-)
G175967 NA non-coding upstream 126019 4630348 ~ 4632785 (-)
G176015 NA non-coding upstream 228053 4732382 ~ 4736416 (-)
G176028 NA non-coding upstream 335659 4839988 ~ 4840693 (-)
G176029 NA non-coding upstream 336419 4840748 ~ 4847141 (-)
bola3 bola3,LOC107686851,LOC107727091 other downstream 502493 3992726 ~ 3996453 (-)
mical2a mical2 other downstream 589053 3851847 ~ 3909893 (-)
serf2 NA other downstream 916959 3549865 ~ 3581987 (-)
G175497 NA other downstream 926684 3569341 ~ 3572262 (-)
G175048 zfhx3,LOC107679901,LOC107565374,LOC107738341 other downstream 1742421 2754355 ~ 2756525 (-)
G176307 NA other upstream 575488 5079817 ~ 5080895 (-)
trip4 trip4 other upstream 635281 5139610 ~ 5196818 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other upstream 1192051 5696380 ~ 5708304 (-)
LOC113536608 LOC108270551 other upstream 2352426 6856755 ~ 6861348 (-)
si:dkey-56d12.4 LOC108270721 other upstream 2976093 7480422 ~ 7484117 (-)

Expression


Co-expression Network