rpl13 (rpl13)


Basic Information

Item Value
gene id rpl13
gene name rpl13
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3136436 ~ 3141997 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930257.2
CTTCCTGATTCTCGCTTCACACTTCCGGTTTGTAAACAGCGGATCGTTCCTATTGGCTGCCGTCTTCATATCCCATAAACCCCTGCGCTCgcacttcctttttcttttcggCCATATTCCGCCCGGACGGGAATAAACAGTCATGGCCCCCAGCCGGAATGGTATGATCCTGAACCCTCACTTCCATAAAGACTGGCAGAAGAGAGTTCGTACCTGGTTCAACCAGCCAGCCAGAAAACTCCGCAGACGTAAGGCTCGTCAGGCGAAGGCTCGCCGCGTCGCCCCTCGCCCAGTCGCCGGACCTCTGAGGCCCATCGTCAGGTGTCCGACGATCCGCTACCACAACAAGGTCCGCGCCGGCGGATTCTCCCTGGAAGAGCTGAAGGCCGCTGGCATCAGCAAGAGAGTGGCCCGCACCATCGGCATCGCTGTTGACCCGCGCCGCCGCAACAGATCCACAGAGTCCCTCCACTCCAACGTCCAGAGGCTGAAGGTGTACCGCTCCAAACTCATCCTGTTCCCCAGAAAGGCATCTAAACCCCAGAAGGGAGACAGCACTgaggaggagctcaAGATGGCAACACAGCTCACTGGACCAGTCATGCCCATTAAGAACGTGCACAAGAAGGAGAAGGCCCGCGTGATCACTGAGGAAGAGAAGAAATTCAAGGCTTTCGCCAGTCTGCGCATGGCTCGCGCCAACGCCCGTCTCTTCGGCATCCGCGCCAAGAGGGCAAAGGAGGCCGCTGAGCAGGATGtagagaagaagaaataaatcattatttgtATGCAACAAAATAAAGCCTCCCCACAAATA

Function

symbol description
rpl13 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within regulation of cell cycle. Predicted to be located in cytoplasm and ribosome. Predicted to be part of cytosolic large ribosomal subunit. Used to study spondyloepimetaphyseal dysplasia. Orthologous to human RPL13 (ribosomal protein L13).

NR:

description
PREDICTED: 60S ribosomal protein L13 isoform X1

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02873 RP-L13e, RPL13; large subunit ribosomal protein L13e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930257.2 True 817 mRNA 0.56 7 3136436 3141997

Neighbor

gene id symbol gene type direction distance location
cpne7 cpne7,LOC107715467,LOC107738346 coding downstream 7791 3075978 ~ 3128645 (-)
zgc:162592 LOC108270985 coding downstream 112956 3020554 ~ 3023480 (-)
LOC113536623 LOC108270986,LOC105889116,LOC107659108 coding downstream 127820 3003935 ~ 3008616 (-)
dhx38 dhx38,LOC106562086,LOC106587179 coding downstream 139328 2976459 ~ 2997108 (-)
hnf4b LOC108271394,LOC108429112 coding downstream 820301 2301621 ~ 2316135 (-)
gcshb LOC108270992 coding upstream 2785 3144782 ~ 3152111 (-)
kars1 kars,LOC102775760 coding upstream 13544 3155541 ~ 3167279 (-)
nfat5b LOC108271072 coding upstream 27326 3169323 ~ 3219284 (-)
pkd1l2b NA coding upstream 92073 3234070 ~ 3252896 (-)
LOC113536785 NA coding upstream 126447 3268444 ~ 3269415 (-)
G175213 NA non-coding downstream 128774 3007004 ~ 3007662 (-)
G175046 NA non-coding downstream 369831 2760210 ~ 2766605 (-)
G175045 zfhx3,LOC107738341,LOC107659104 non-coding downstream 376610 2756832 ~ 2759826 (-)
G175110 NA non-coding downstream 405563 2729695 ~ 2730873 (-)
G175109 NA non-coding downstream 410683 2725094 ~ 2725753 (-)
G175329 NA non-coding upstream 63260 3205257 ~ 3205466 (-)
G175330 NA non-coding upstream 64754 3206751 ~ 3206971 (-)
G175333 NA non-coding upstream 68150 3210147 ~ 3210404 (-)
G175483 NA non-coding upstream 369994 3511991 ~ 3512232 (-)
LOC113536694 NA non-coding upstream 430661 3572658 ~ 3577973 (-)
G175048 zfhx3,LOC107679901,LOC107565374,LOC107738341 other downstream 379911 2754355 ~ 2756525 (-)
G175098 NA other downstream 533225 2602414 ~ 2603211 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other downstream 1114205 2014722 ~ 2022231 (-)
cd82a cd82 other downstream 1203214 1856883 ~ 1933222 (-)
G174247 fbxo22 other downstream 2077202 1057656 ~ 1059234 (-)
serf2 NA other upstream 407868 3549865 ~ 3581987 (-)
G175497 NA other upstream 427344 3569341 ~ 3572262 (-)
mical2a mical2 other upstream 709850 3851847 ~ 3909893 (-)
bola3 bola3,LOC107686851,LOC107727091 other upstream 850729 3992726 ~ 3996453 (-)
lto1 oraov1 other upstream 1356949 4498946 ~ 4504329 (-)

Expression


Co-expression Network