gcshb (LOC108270992)


Basic Information

Item Value
gene id gcshb
gene name LOC108270992
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3144782 ~ 3152111 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930313.2
CAACTCAGTGTCCCTGTGTCCCCTGTGACCACCGAGAGCGCGCATCGTCGGGAGCGCGCACGGTGTAGTGCATCATTGCGGATCAGGGGGAAAGATGGCGATGCGCGCGACGCTCACGCGCTTTTCCTGCAACTTTTCAGTAGTTTTGCCTTCTCTGTCCAGAACTGTAGGGCACCAGATCCTAAGAAGGACGAACAGATCTATTTCACGGACTTTCTGCACGACCTCCTGGCTTTCCCAAGCTCTCAAGTTTACAGACAAGCACGAGTGGGTACGAGCGGACGGAGACATCGGTACAGTGGGCATCAGCGCTTACGCTCAGGAAGCTTTAGGTGATGTGGTATATTGTGGACTGCCGGAGGTTGGAACAAAACTTCAACCAATGGAGGAATTTGGTGTGTTAGAAAGCGTGAAGGCTGCTAGCGAGCTGTACTCGCCTCTGAGTGGAGAAGTCACTGAAATCAACACAGAACTGACGGAGAACCCCGGACTTGTCAACTCGTCCTGCTACGAGcgcgGATGGTTGATTAAGATGACGATAGAAAACCCGGGAGAACTGGAAGCCCTTATGGATGAAGCTGCTTATGAAAAATACATCAAGTCTCTGGAGTAGTTCAACTGAATTCCATGTTAAATCTGATTTATCTTTATGtatcaaaaataaacagattttagtGCTAAAAGCCCACTGCAAATTCTTATAATTAGAGAGATTGTGCTTATAAAATTCATTAATGTCAAGTTCTAGGTATTTTCACCAGATCATtgcttgtgtgagtgtgtaatgagactttaatacacattaatatgTTTGAAGGAGCTCTGGGTTGCAGGACCTGTAGTCCAGTTTTAGGTTCTTTGAATAAATTTGGACCATTGGCGCTTtagcagaaataaaataaagctgaaatttATTCTTGGTAACGGTATAAAACGTGTCTCCAACTTCATGtccagaatatttttttttaaataatttgctttAATGGAAGGACTCCAGTGAGGACACCTTAAAGCTTAATGTGTAACTCGGTGCTTTATATTTAGAAAAGTGGGATTATTCTTTTGATTAGTAGACAGCAGTTATGATCAGTAACATTTGGGAGAAATTTAGAGTTTCTAGACTGTTTTAACACATTAAGCCGAGTTCAGGTGTTTCCTTGTAATGGGTTTCTACAGAGCTGAAAACACATTTCAATATTTCAGCGTTTATGACAGACTAAGTCTGTGAGAGATTTGATTGTTGTTTTGGTACATTAATGCACGTTAAGATTTATTTTCACGTTACAGGATGTCACCAATACGCTGCCGTATTAATGAACGTGAACAAGCTTCGTATGTGAAAGTAAAACCCACATGAAAACTCGTGTGACATTTTTGTTCCCGCAGGATCCCAGGATTACTCCTTAGTCACTGGGAATTCAGAGAACTGAGGATAAAGTGCACTAACAGGAATCTTCTCTGAGTTCATTACAACAGTCGGTTACAGGAGAGATTAGAGCAGGTGTGATTGTTGTTCAGTAATTcagataataaatattacatattaaattcaTCCTTCAATTA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006546 glycine catabolic process biological_process

KEGG:

id description
K02437 gcvH, GCSH; glycine cleavage system H protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930313.2 True 1566 mRNA 0.41 5 3144782 3152111

Neighbor

gene id symbol gene type direction distance location
rpl13 rpl13 coding downstream 2785 3136436 ~ 3141997 (-)
LOC113536794 NA coding downstream 4621 3140070 ~ 3140161 (-)
LOC113536793 NA coding downstream 5875 3138827 ~ 3138907 (-)
cpne7 cpne7,LOC107715467,LOC107738346 coding downstream 16137 3075978 ~ 3128645 (-)
zgc:162592 LOC108270985 coding downstream 121302 3020554 ~ 3023480 (-)
kars1 kars,LOC102775760 coding upstream 3430 3155541 ~ 3167279 (-)
nfat5b LOC108271072 coding upstream 17212 3169323 ~ 3219284 (-)
pkd1l2b NA coding upstream 81959 3234070 ~ 3252896 (-)
LOC113536785 NA coding upstream 116333 3268444 ~ 3269415 (-)
LOC113536784 LOC108270651,LOC108276727 coding upstream 124752 3276863 ~ 3277834 (-)
G175213 NA non-coding downstream 137120 3007004 ~ 3007662 (-)
G175046 NA non-coding downstream 378177 2760210 ~ 2766605 (-)
G175045 zfhx3,LOC107738341,LOC107659104 non-coding downstream 384956 2756832 ~ 2759826 (-)
G175110 NA non-coding downstream 413909 2729695 ~ 2730873 (-)
G175109 NA non-coding downstream 419029 2725094 ~ 2725753 (-)
G175329 NA non-coding upstream 53146 3205257 ~ 3205466 (-)
G175330 NA non-coding upstream 54640 3206751 ~ 3206971 (-)
G175333 NA non-coding upstream 58036 3210147 ~ 3210404 (-)
G175483 NA non-coding upstream 359880 3511991 ~ 3512232 (-)
LOC113536694 NA non-coding upstream 420547 3572658 ~ 3577973 (-)
G175048 zfhx3,LOC107679901,LOC107565374,LOC107738341 other downstream 388257 2754355 ~ 2756525 (-)
G175098 NA other downstream 541571 2602414 ~ 2603211 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other downstream 1122551 2014722 ~ 2022231 (-)
cd82a cd82 other downstream 1211560 1856883 ~ 1933222 (-)
G174247 fbxo22 other downstream 2085548 1057656 ~ 1059234 (-)
serf2 NA other upstream 397754 3549865 ~ 3581987 (-)
G175497 NA other upstream 417230 3569341 ~ 3572262 (-)
mical2a mical2 other upstream 699736 3851847 ~ 3909893 (-)
bola3 bola3,LOC107686851,LOC107727091 other upstream 840615 3992726 ~ 3996453 (-)
lto1 oraov1 other upstream 1346835 4498946 ~ 4504329 (-)

Expression


Co-expression Network