pde3b (pde3b)


Basic Information

Item Value
gene id pde3b
gene name pde3b
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 45726 ~ 96130 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930344.2
CGCACTACCCCGAGGCTGAAATGGCTCCTGCACCCTGCTTAGTGCCCTACAGGTCCGGCAGAGAGCCGATCCGGACACGGCCATGAAATCATGACTCGCGGCTGCTCGGGTCGCTGTGAATTTTCGCCTCTAGGCGGCGCTACAGAGCTCATCAGcgctaaaacaacaacaacacttcaccttctttcttcctttgcagtcgagagagaagaaaaaaaatgcaggagcGCGTTTGAGTCGGTTCCGGAGCGCGCGCCGCCATGTAGCGAAACCGTCGATCGTCGGCAGGATGAAAGTTTGAGACGGGAACGGAAAGCgcgtgctgttttttttttggtcggGAGGAGGGAAAAACATGGCTGTGCGGGAGGAAGGCGAGGTTCCGCACGGTAAAGTCAGGCACGACGGCGGCGCGGAGAGCTTCAGGAACGGCTACGTGAAGAGCTGCGTCACGCCGCTTAAGCAGGACCCACCGCGGGGGCTTTTCTATAGCGCGTGCCGCTCGTGCAGCGACTCGGACTCCAGCTCCTCCGGGGTCGCACGCGCCTCCGCCGCCTACGCGGGAGCTTTCGCAGCGCTCGCGGCGTCCTTCTTCCTCTCGCGCCGCTTTCAAAGCGTCGAGTTGCGCGCGCTGCTGTCGGACGTCGCGAGCTCTCTGAGCCCGTTGTTCAGTATCGGGTGCGCGCACTTCTTCCTCACCTTCTACCTGCGCCGGCGGAAGCGCGAGAGCAGTCGCGGCTGGCTCGTGGCCCTGCCGGTCTCGTGCTACCTGGGGGACTTCGCGGCGCTGCGCTTCCTGCAGTGGGGATCCGGAGAGCAGGAAGACTCCGCCGCTGCCTCGCATCACGTGCACACGGCGGGCCGCCTGCTGTTCGTGCTCGGTTGCGTGGGCCTGCTCACTCTGCTCCCGACTCTCAAACTCCGGCACAGCGTGCTCGTGCTGCTTTTCGCCAGCGGCGCGTGGCTGCTCGCGCACACCGGCCTGAGCTGCGTGGCATCGTGGCTCAGGCCGCTGATCGCGTGCGCTGCCGCCGTCACAGGCTCGGTGCTCGGCCTCGGGTTCGACCGCTCATATCCGCCGAGGGAGACCGCCAACCGGACATCCGAGGAGCGCGTGCCGGTGGTGAGGCCGCGGCGGAGATCCAGCTGTGTGTCGCTCGGAGAGACTTCCAGTAGCTACTATGGCAGCTGGAAAATGCCGCGCAGACCGTCATTACCGTGCATCTCCCGGgagcagATGATCCTGTGGGACTGGGACCTGAAACAATGGTCCAAACCTCAGTATCAGggcTCAGTGTGTGGAGCAGATCTCTCAGTGATTAGTGATGTGAGGAATCTGATCTCAGACCTGCTGCAGGACTCATCTCTGTCTCCACACATCGTGTCGTCATTGCGCAGCGTCAGCAGTTTGATCAGCAGCGTCTCAGGCTCCTGCCGGCCGCGTCCCAATCCATTCACACCGTTCCCAGGGTTCTACCCCTGTGCTGAGGCAGAGGATCCGAGTGACAGAGCTGAGAGAAAGCCTGTGAAGggCCTGAGTAGTAGGAATAGTCTGCCCACTCCTCAACTGAGACGGAGCTCTGCGTcctcatccctctctcctctgGAGACACTCTCGTCCCCTCGCTGGGAGCGCAGTAATGGAAAGAGATCTCACACTGAGCTTAGTGCCGGCAGTCAGGGATCATTCTCCAACGGGCCAAACAGCAACCTGCTGACCATCCCGAAGCAGAGATCCTCCTCTGTTACACTCGCCTATGGCCACAACCTGCCCAGAAGACCAgGTGCGTCTCCGAGTCTGAGTCCGCTCAGTTCTCCAAGTCACAGCCCCCCGTCATGTCCGAGCTCATCGCTGATCACTCGTTCTCCGGTGGAGTTTCCCGACACGGCCGACATCCTCACCAAGCCCAGCGTAAACCTGCACAAAGCACCGGGGTTTTCGCTCAGCTCACTCTGCACCAGttgTGGGCGGCAGATACTGAAGAGCAGCTCTAACGCTGAGGTGGGTGACGGTCACATGACCTCGGGGCCTGACATGCAGAGAAGACGATCAGCTGAGGGAACGGAATACAGCAGCGATGGGCTGATCAGGGAGGAGAGCGGGGAAGTAGATGCTCAGGGAGAGGAAGCAGGACTGACTGCAAAAGCTAAAGAACGAGCTCagcatgaggaagaggaggaggaaaagcaAAGCACGGGTGTGCAGGAGACACCATCTCGTCCTGAGGAATTCAAGTTAGATCCTCTGCTGGAAGACCATGAAGCTCTGTTGGAGAAGCTCAACAACTGGAACTTCCAGATCTTTGACCTGATGGAAAGGACGGGAGGGAAGTCGGGACGGATCCTCAGCTATGTGGCCTACACTTTGTTCCAGGACACGGGTCTGTTTGAAATCTTCAAAATCCCCGTCCGGGAGTTCATGACGTACTTCTGTGCTCTGGAGAACGGCTACCGCGATATACCCTATCACAATCGTGTCCATGCCACAGATGTCCTTCATGCTGTGTGGTACCTCACCACCAGACCCATACCAGGCTTCCAGCAGATCCATAATGAACACgtgacaggaagtgacacaGACTCAGACAGTGGTATCTCTCCTGGTCGGGTTTCTTACGCTTTGTCCAAAAGCTCCTCCATCTCAGACAATAGTTACGGCTGCTTGGCCTGGAACGTCCCTGCCCTCGAGCTCATGGCACTATATGTAGCAGCTGCTATGCATGACTACGATCACCCAGGTCGCACAAACGCCTTTCTTGTAGCTACTAACGCCCCTCAGGCGGTGCTGTACAACGACCGCTCGGTTTTGGAAAACCACCATGCTGCCGCTGCATGGAGCCTTTTCCTGTCTCAGCCTGAGTTTAACTTTCTGTCCAACCTGGACCATGTTGAGTTCAAACGTTTTCGCTTTCTTGTTATCGAGGCCATCCTCGCCACAGACCTGAAGAAGCACTTTGATTTCTTAGCCGAGTTTAACTCCaaggTTACAGATGTGAATAGCCCAGGTATCGACTGGACTAATGAGAATGACAGGTTGCTGGTATGCCAAGTGTGCATCAAGCTGGCAGATATTAATGGACCAGCGAAAGAGCGCAAACTTCACCTGAAATGGACAGAGGGCATTGTGAATGAGTTTTATGAACAGGGAGATGAAGAGGCTCGCCTCGGATTACCCATCAGCCCTTTCATGGACCGCTCTGCGCCTCAGCTGGCCAAGCTGCAGGAATCCTTTATCACGCACATTGTCGGGCCACTGTGCAACTCATACGATGCTGCTGGCCTCCTCCCAGGTTACTGGgttgatgaagatgatgtgGATGAAGAAGATGGAGAGGAGGATGATGCTGAAGACACAGAGACTGACGATGAAGACCTTGATGAAGAGCTCCAGTTAAAGCCAAGGAAAAGCCGTCAGCGTCTGTTCTGCAGCATTATGCAGCACCTGACTGAAAACCACACGGCGTGGAAGCAGATCATcgaggaagaggagaagaacTGTGACCTGGGCCTTCATCAGCAGCAAGAGCAGCAGCAGGCAGACACATTGAACCTTCCTTCTCCCTCCTCAACCTCAGATGACATTCAGGTCATTGAGGAGGAGGCTGAAGAGGAGGAGCGACAGCAGGAGGGGGATTGAGTTGAGCCGATTGGCTGAGAAAAAACTAGGGGAGGGGCCTGAAGCAAACAATTGACTCTTTGCTCTTTCCTCTCCTGCatcagaacacagacacacagtccgAATTGACACCAGAAGATTCTGCCAGATCTCCTGTACTGAAATGAATCACTGTGACGCAAATGCAGTTCACATggtgttggaaaaaaaacaaaaaacaaactgaaaaaaggCCTTACTACTGTGAGAGCATCCTATGCACTTTCACCCCATGGAGAATGATGGAGGATGAGAAAAAGGgttgaaaaaaagacagaatgaaatAATGAACGAAACTCTCTATGGTTATTTGGCTGTGATGCTGCCTTGAAAGCAGAGCTCTTAACTCTCCTCTAGGTacttattacaattattt

Function

symbol description
pde3b Predicted to enable 3',5'-cyclic-nucleotide phosphodiesterase activity and metal ion binding activity. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in oocyte and oocyte stage V. Orthologous to human PDE3B (phosphodiesterase 3B).

NR:

description
PREDICTED: cGMP-inhibited 3',5'-cyclic phosphodiesterase B-like

GO: NA

KEGG:

id description
K13296 PDE3B; cGMP-inhibited 3',5'-cyclic phosphodiesterase B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930344.2 True 4031 mRNA 0.56 16 45726 96130

Neighbor

gene id symbol gene type direction distance location
ric3a NA coding upstream 171600 267730 ~ 272572 (-)
lmo1 lmo1,rbtn1,LOC107085592,LOC107593328 coding upstream 203094 299224 ~ 335808 (-)
stk33 stk33,LOC106562365 coding upstream 352487 448617 ~ 470183 (-)
rerglb rerglb,LOC108271353,LOC108429104,LOC107674441,LOC107593310,LOC107586038 coding upstream 377701 473831 ~ 480942 (-)
trim66 trim66,LOC107750616 coding upstream 390515 486645 ~ 511403 (-)
G173573 NA non-coding upstream 29377 125507 ~ 127757 (-)
G173581 NA non-coding upstream 42063 138193 ~ 139136 (-)
G173586 NA non-coding upstream 59412 155542 ~ 215461 (-)
G173602 NA non-coding upstream 87897 184027 ~ 185814 (-)
G173603 NA non-coding upstream 89321 185451 ~ 187162 (-)
calca calca,LOC108271361,LOC107700617,LOC107593372,LOC107688176,LOC107750650,LOC107586036 other downstream 11560 30281 ~ 34166 (-)
G174207 LOC108270943,LOC108444425 other upstream 865366 961496 ~ 963078 (-)
fbxl8 fbxl8 other upstream 902929 999059 ~ 1003032 (-)
G174247 fbxo22 other upstream 961526 1057656 ~ 1059234 (-)
cd82a cd82 other upstream 1760753 1856883 ~ 1933222 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other upstream 1918592 2014722 ~ 2022231 (-)

Expression


Co-expression Network