rerglb (rerglb,LOC108271353,LOC108429104,LOC107674441,LOC107593310,LOC107586038)


Basic Information

Item Value
gene id rerglb
gene name rerglb,LOC108271353,LOC108429104,LOC107674441,LOC107593310,LOC107586038
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 473831 ~ 480942 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930391.2
CTCCTAAATCTCGTGTTGTGAAATCTTATCTGTTTCAGAGAGACTTCCTGATAACTCCTGATGTTAAACTCTCCACAGTGTGGGAGGAGAAAGTGGAGATCAGAGCGTTAATGTGCATGAGAAAAGGAGGGAGAACCTCAGAGACggagaggaaaacagagagaaaggttGTATTTCTCCTCAGCTGAGGAACACAGTGTTCGAGTCTCGGTCAGTTGTGCAGTCATGAACGACGTGAAGCTGGCTCTGCTAGGCAGCGAGGGAGCGGGGAAATCAGCGGTTCTGGTGAGATTCCTGACTAAACGCTTCATTGGAGAATATGCCTCGAATACAAATTCGTTATACCAGAAAAGGCTCTCGATCGATGGCAGACAGTTGAACTTGGAAGTCTTTGATCCATGCTCACAGAATGTGGAGAGTAGATGCATCCTGGAGGAACCGGTGGACTGGGCAGACGgctttgtggtggtgtacacCATCAGCGACCGCATGTCTTTCCTCAACGCTCAAAACATCCTGCAGCAGATCAGAGAGAGCCGTCGGGAGACCTGTAAAGGAGACATGGACGTCCCCATCTGCCTGGTGGGGAATAAGCAGGACCTCTGTCACAGCCGGCAGGTGAGCGAGGAAGAGGGACGTTCTCTCGCCCTGGAGCACAAGTGCGTCTTTCAGGAAGTGTCTGCTGCTGAGAACTACCTGGACATCGCCAACCTCTTCACCAGACTCATACGACACGTCATGGAGCACATGAAGCACAGATTCGAGCGCCGGCGCTACAGCGGCTCGAAATCCATGGCCAAACTCATCAACAACGTGTTTGGGAAGAGGAGGAAGTCTGTCTGAAGCACTTTACCGTGAAAGAACATGAGAACCTTCAGAGTGTTTGGAGTCTGGAACGTCCCCTAGAACCTGATGTTAACAGCTAGTGATGAGAACTCACCTGAGGAGAGGAACCCAGACAGCACTTCCTACTCTCTTCAAACATTTAGAGCCATTAAAGCTTCTTCGGTTGTTCCTCTAGGTTAAAGGTTTTGTGTAGAATCTTGCAGTAGACAGAGAAGAAATAACAAGTAGAACTCTTTAGGAGGCTAAGATCccttaattaataataatatccctTAATAAtcccttaattatccaacaaaACCTTACAGAaccactgaagaacccttttttctaagagtgtaccaagtaccaagaggttaaatattaaactcctgacaggttctacgTCATAAAACACTTACCcacttaatacacacactcttaaaaaggttctttaagggttctttaagggttctttaagggttctttggataattaaataatttaacactttGACTCTTCTAGATCCAGAGGGAGAACCGAAGAATCCTTCAGGGTTTTAGATTTTGGAGGAGTGTACGCTGCTGAATCGCGGTAGCTACACAAGTTTaaacagaaagtaaaaatgaaattgaagaTTATTTCAAAGCCAtcacatttattcataaataatttaaactttattaCTACCCAAGATAAGGACCATTTTTTCTTCTCCACTGTAAACTACGGCATGTAGAAACATTCACAACAGCGTCTGAGTGAGTTCTGTCTGTCTGGAGGAGTGGAGAAGAATTAAACAccaatttattttaatctcaTTCAAAAGACTtctaaaataaaccaaacatcTGAATTGaactattaataaaacatatctGTGTGTAGTTTAATAAGATTTATTCCTATTATTAAAAAACTCtattaaataaattgtgtaatctgcagtgatttttgtgattaatATTTAATCCTTGGAAGCACAGTGGACATTTCTGGTCTTTATTTCTTGCCTAATTTAGTGATTCACTTTGAAGTTGTTCTTCTTTTATCCTGTTAATGCGGTGGat

Function

symbol description
rerglb Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Orthologous to human RERGL (RERG like).

NR:

description
PREDICTED: ras-related and estrogen-regulated growth inhibitor-like protein

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930391.2 True 1895 mRNA 0.42 5 473831 480942

Neighbor

gene id symbol gene type direction distance location
stk33 stk33,LOC106562365 coding downstream 3648 448617 ~ 470183 (-)
lmo1 lmo1,rbtn1,LOC107085592,LOC107593328 coding downstream 138023 299224 ~ 335808 (-)
ric3a NA coding downstream 201259 267730 ~ 272572 (-)
pde3b pde3b coding downstream 377701 45726 ~ 96130 (-)
trim66 trim66,LOC107750616 coding upstream 5703 486645 ~ 511403 (-)
dennd2b st5 coding upstream 33214 514156 ~ 584811 (-)
tmem9b tmem9b,LOC107700603,LOC107585953,LOC107754675,LOC107750540,LOC107674442 coding upstream 111861 592803 ~ 602182 (-)
scube2 scube2 coding upstream 124827 605769 ~ 639000 (-)
slc7a6 slc7a6,LOC108271159,LOC107700601 coding upstream 166117 647059 ~ 660384 (-)
G173685 NA non-coding downstream 17646 455864 ~ 456185 (-)
G173639 NA non-coding downstream 207293 263184 ~ 266538 (-)
G173586 NA non-coding downstream 258370 155542 ~ 215461 (-)
G173603 NA non-coding downstream 286669 185451 ~ 187162 (-)
G173602 NA non-coding downstream 288017 184027 ~ 185814 (-)
G174054 NA non-coding upstream 25840 506782 ~ 519973 (-)
G174074 NA non-coding upstream 87471 568413 ~ 569242 (-)
G174127 NA non-coding upstream 315452 796394 ~ 798832 (-)
G174147 NA non-coding upstream 342697 823639 ~ 823896 (-)
G174150 NA non-coding upstream 348994 829936 ~ 830269 (-)
calca calca,LOC108271361,LOC107700617,LOC107593372,LOC107688176,LOC107750650,LOC107586036 other downstream 439665 30281 ~ 34166 (-)
G174207 LOC108270943,LOC108444425 other upstream 480554 961496 ~ 963078 (-)
fbxl8 fbxl8 other upstream 518117 999059 ~ 1003032 (-)
G174247 fbxo22 other upstream 576714 1057656 ~ 1059234 (-)
cd82a cd82 other upstream 1375941 1856883 ~ 1933222 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other upstream 1533780 2014722 ~ 2022231 (-)

Expression


Co-expression Network