rps13 (rps13,LOC107586033,LOC107700620,LOC106561079)


Basic Information

Item Value
gene id rps13
gene name rps13,LOC107586033,LOC107700620,LOC106561079
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 1647120 ~ 1653478 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930538.2
CTCGGGCGCACTCTACTTCCTGTCAGCCtcattctgctctctctctttctcggcTCTCTCGCGAACGCCATCATGGGTCGCATGCACGCTCCCGGtaAGGGCTTGTCCCAGTCAGCTCTCCCATACAGACGCAGTGTTCCTACATGGCTGAAACTGACGTCAGATGATGTCAAGGAGCAGATCTTCAAGCTGGCCAAGAAGGGTCTGACCCCCTCGCAGATTGGTGTGATCCTGAGGGATTCTCACGGCGTGGCTCAGGTGCGCTTCGTCACCGGCAACAAGATCCTCAGGATCCTGAAATCCAAAGGTCTGGCTCCTGATCTGCCTGAGGATCTGTACCACCTGATCAAGAAGGCCGTCGCTGTGAGGAAGCACTTGGAGAGGAACAGGAAGGACAAAGATGCCAAATTCCGCCTGATTCTTGTTGAGAGCAGAATCCACAGGCTGGCTCGTTACTACAAGACCAAGAGAGTTCTCGCTCCCAACTGGAAGTACGAATCCTCCACGGCTTCTGCACTGGTGGCATAAATGTAAAGACTTTACACAAAATAAAGACCATTTGGATGaa

Function

symbol description
rps13 Predicted to enable small ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in nucleolus. Orthologous to human RPS13 (ribosomal protein S13).

NR:

description
PREDICTED: 40S ribosomal protein S13

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02953 RP-S13e, RPS13; small subunit ribosomal protein S13e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930538.2 True 568 mRNA 0.53 6 1647120 1653478

Neighbor

gene id symbol gene type direction distance location
plekha7b plekha7 coding downstream 8858 1517346 ~ 1638262 (-)
sox6 sox6 coding downstream 149394 1324651 ~ 1497726 (-)
tmppe tmppe,LOC107585964,LOC107674465 coding downstream 487158 1148056 ~ 1159962 (-)
slc38a8b LOC108271372,LOC108444426,LOC107741399,LOC107577425 coding downstream 499144 1138521 ~ 1147976 (-)
aph1b aph1b,aph1a,LOC108271374,LOC108444443,LOC107700410 coding downstream 509417 1131031 ~ 1137703 (-)
caprin1a caprin1,LOC108429133 coding upstream 14148 1667626 ~ 1687076 (-)
ext2 ext2,LOC107593432 coding upstream 123863 1777341 ~ 1831151 (-)
tspan18a tspan18,tspan18a,LOC107585935,LOC107671373,LOC107593454,LOC107750555 coding upstream 178848 1832326 ~ 1874531 (-)
tp53i11a tp53i11,tp53i11a,LOC107687052,LOC108435353,LOC107671372 coding upstream 283348 1936826 ~ 1979679 (-)
LOC113536364 LOC108271342 coding upstream 343316 1996794 ~ 2010622 (-)
G174379 NA non-coding downstream 11464 1635392 ~ 1635656 (-)
G174352 NA non-coding downstream 114906 1531816 ~ 1532214 (-)
G174345 NA non-coding downstream 177138 1465494 ~ 1469982 (-)
G174329 NA non-coding downstream 227375 1419369 ~ 1419745 (-)
G174325 NA non-coding downstream 232930 1409997 ~ 1414190 (-)
G174390 NA non-coding upstream 63359 1716837 ~ 1717245 (-)
G174622 NA non-coding upstream 337766 1991244 ~ 1991701 (-)
G174617 NA non-coding upstream 340623 1994101 ~ 1995636 (-)
G174606 NA non-coding upstream 391963 2045441 ~ 2050452 (-)
G174600 NA non-coding upstream 398131 2051609 ~ 2053711 (-)
G174247 fbxo22 other downstream 587886 1057656 ~ 1059234 (-)
fbxl8 fbxl8 other downstream 644088 999059 ~ 1003032 (-)
G174207 LOC108270943,LOC108444425 other downstream 684042 961496 ~ 963078 (-)
calca calca,LOC108271361,LOC107700617,LOC107593372,LOC107688176,LOC107750650,LOC107586036 other downstream 1612954 30281 ~ 34166 (-)
cd82a cd82 other upstream 203405 1856883 ~ 1933222 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other upstream 361244 2014722 ~ 2022231 (-)
G175098 NA other upstream 948936 2602414 ~ 2603211 (-)
G175048 zfhx3,LOC107679901,LOC107565374,LOC107738341 other upstream 1100877 2754355 ~ 2756525 (-)
serf2 NA other upstream 1896387 3549865 ~ 3581987 (-)

Expression


Co-expression Network