kars1 (kars,LOC102775760)


Basic Information

Item Value
gene id kars1
gene name kars,LOC102775760
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3155541 ~ 3167279 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930654.2
CATATCACAGGAGGCGGGGCTTATCGAAAGCCCGttaggaagagaaagaaagaaacctcgCGCGTGAGGTGTTTGGTAGCAGCGCGGAGACTGGGACAAGATGGCGGACGTGGTGGCGGATGGAGAGAAACTCAGTAAAAAtgagctgAAGAGGCGCATGAAGGCGGAGAAGAAGGCTGCGGAGAAGGAGGCCAAGCTCAAGGACCAAGCGCAGCAGAACAAGGAGGCGAGTGATAAGCAGGAGCAGCATGTGGACGGAGTGGACGAGGAGACACTGGACCCCAACCAATACTTCAAGATCCGCACGCAGGCCATCCAGGCTCTGAAGGGAACCGCTGAAGACCCCTATCCCCACAAGTTTCACGTGGACATGTCGCTTACTGAGTACATAGAGAAATACAATCACCTACAGCCCGGGGAGCAGCTATCAGACGTCGTCCTTAACGTGTCAGGTCGTGTCCATGCCAAGAGGGCCTCAGGGGCCAAACTGCTCTTCTATGACCTGAGAGGAGAGGGGGTCAAGCTGCAGGTTATGGCGAACTCCAGGAATTACAAGTCAGAGGAAGACTTCGTTCACATCAACAATAAATTGCGCCGAGGTGACATCATCGGCGTTCGTGGTAATCCTGGGAAGACAAAGAAAGGCGAGCTGAGCATCATCCCCATAGAGATGACCCTGCTGTCTCCGTGTCTGCACATGCTTCCTCACCTGCATTTCGGCCTGAAGGACAAGGAAACTCGGTTTCGTCAGCGGTATTTGGATTTGATCTTGAACGACTTTGTGAGGCAAAAGTTTGTGACCCGCGCCAAGATCATCACTTACCTGCGCAGCTTCTTGGACCAGCTTGGTTTCCTTGAGgTCGAGACTCCGATGATGAACCTGATTCCTGGAGGCGCAGTGGCTCGACCTTTTGTCACCTACCACAATGAGCTGGATATGAACCTGTACATGAGGATCGCGCCCGAGCTTTACCACAAGATGCTGGTGGTTGGAGGTATCGACCGTATCTATGAAATCGGTCGTCAATTTAGAAACGAAGGCATTGACCTCACTCACAACCCAGAGTTCACTACGTGTGAGTTTTATATGGCCTACGCTGACTACAATGATGTGATGGAGATCACTGAGAAGCTTCTCTCAGGAATGGTGAAGCACATCACAGGAGGTTATAAGGTCACCTATCACCCTGATGGACCAGAAGGACAAGCCTATGAAATCGACTTTACTCCTCCTTTTAAGAGAATCAGCATGACCCATGATCTGGAAAAGGAGATGGGAGTGAAATTCCCAGCCACTGACGCTTATGATTCTGATGAAACCCGCAAATTCTTTGATGATTTGTGTGTTCAGAAGGGAGTGGAATGTCCGCCTCCAAGAACAACAGCTCGCCTCCTGGAtaagTTGGTGGGAGATTTCCTCGAGGTGAAATGCATCAGCCCTACGTTTATTTGTGACCACCCTCAGCTCATGAGTCCACTAGCAAAATGGCACAGATCCCAGAAAGGGCTGACTGAGCGTTTTGAGCTCTTTGTCATGAAGAAAGAAATCTGTAACGCCTACACTGAGTTGAACGACCCGATCAGGCAGCGTGAGCTCTTTGAGCAGCAGGCTAAGGCGAAGGCAGAAGGTGATGATGAGGCCATGTTTATAGATGAGACATTCTGCACAGCGTTAGAATATGGTCTTCCACCTACTGCAGGCTGGGGCATGGGCATCGACCGCCTCGCCATGTTCCTCACTGACTCCAACAACATCAagGAGGTCCTTCTCTTCCCCGCCATGAAGCCTGATGACCAGAAACCCGCCCCTCCAGCAGAGGGCACTTCTGTTTAA
>XM_034308871.1
ATGTTGACGCTGGTCAGAGCAGCCAGGCAGCCCGTGTGCCGGGCCGTCGGGTTACGGGTGCAGAAGTTTGCGCCCCACGTTCAGCAAACGGTGCCTTCGCTTATTGAAGGATGTCGCTGGAGAGGTGACAAAAGtgagctgAAGAGGCGCATGAAGGCGGAGAAGAAGGCTGCGGAGAAGGAGGCCAAGCTCAAGGACCAAGCGCAGCAGAACAAGGAGGCGAGTGATAAGCAGGAGCAGCATGTGGACGGAGTGGACGAGGAGACACTGGACCCCAACCAATACTTCAAGATCCGCACGCAGGCCATCCAGGCTCTGAAGGGAACCGCTGAAGACCCCTATCCCCACAAGTTTCACGTGGACATGTCGCTTACTGAGTACATAGAGAAATACAATCACCTACAGCCCGGGGAGCAGCTATCAGACGTCGTCCTTAACGTGTCAGGTCGTGTCCATGCCAAGAGGGCCTCAGGGGCCAAACTGCTCTTCTATGACCTGAGAGGAGAGGGGGTCAAGCTGCAGGTTATGGCGAACTCCAGGAATTACAAGTCAGAGGAAGACTTCGTTCACATCAACAATAAATTGCGCCGAGGTGACATCATCGGCGTTCGTGGTAATCCTGGGAAGACAAAGAAAGGCGAGCTGAGCATCATCCCCATAGAGATGACCCTGCTGTCTCCGTGTCTGCACATGCTTCCTCACCTGCATTTCGGCCTGAAGGACAAGGAAACTCGGTTTCGTCAGCGGTATTTGGATTTGATCTTGAACGACTTTGTGAGGCAAAAGTTTGTGACCCGCGCCAAGATCATCACTTACCTGCGCAGCTTCTTGGACCAGCTTGGTTTCCTTGAGgTCGAGACTCCGATGATGAACCTGATTCCTGGAGGCGCAGTGGCTCGACCTTTTGTCACCTACCACAATGAGCTGGATATGAACCTGTACATGAGGATCGCGCCCGAGCTTTACCACAAGATGCTGGTGGTTGGAGGTATCGACCGTATCTATGAAATCGGTCGTCAATTTAGAAACGAAGGCATTGACCTCACTCACAACCCAGAGTTCACTACGTGTGAGTTTTATATGGCCTACGCTGACTACAATGATGTGATGGAGATCACTGAGAAGCTTCTCTCAGGAATGGTGAAGCACATCACAGGAGGTTATAAGGTCACCTATCACCCTGATGGACCAGAAGGACAAGCCTATGAAATCGACTTTACTCCTCCTTTTAAGAGAATCAGCATGACCCATGATCTGGAAAAGGAGATGGGAGTGAAATTCCCAGCCACTGACGCTTATGATTCTGATGAAACCCGCAAATTCTTTGATGATTTGTGTGTTCAGAAGGGAGTGGAATGTCCGCCTCCAAGAACAACAGCTCGCCTCCTGGAtaagTTGGTGGGAGATTTCCTCGAGGTGAAATGCATCAGCCCTACGTTTATTTGTGACCACCCTCAGCTCATGAGTCCACTAGCAAAATGGCACAGATCCCAGAAAGGGCTGACTGAGCGTTTTGAGCTCTTTGTCATGAAGAAAGAAATCTGTAACGCCTACACTGAGTTGAACGACCCGATCAGGCAGCGTGAGCTCTTTGAGCAGCAGGCTAAGGCGAAGGCAGAAGGTGATGATGAGGCCATGTTTATAGATGAGACATTCTGCACAGCGTTAGAATATGGTCTTCCACCTACTGCAGGCTGGGGCATGGGCATCGACCGCCTCGCCATGTTCCTCACTGACTCCAACAACATCAagGAGGTCCTTCTCTTCCCCGCCATGAAGCCTGATGACCAGAAACCCGCCCCTCCAGCAGAGGGCACTTCTGTTTAACACTGTGACCTGTGATGTCGCCTGATCAGAAATCAGTGCCACGGTGATGAGAGCGAGAGATGATTCATCAGCACCAGGGTTCATGTTTCTGTCTGACTGTGCAGGTTACTGTTAACAATTGATGTTTATGTTCTGAAGGATTTCACGTTGACGTAAAAGGGAAGTATATCActgtcttttttattcatttaggcAGAAACAGTGAACcccagttttgtttttttgttttgttttttttttactgctgctTTGTCCATTGTCAGTTCACATCAGGTTCTTACCCTCGAGCAATCAAGAAGATGAAGATTCAAATTCAGccatatttttctgtaataatgGTTTTAATACCACCTGTCCTCTGTATTTTTAATGATCACAAAATTGGTCATAGGAATAAACCTTCATGTGCGTGATGAAA
>XM_034308872.1
TTATCGAAAGCCCGttaggaagagaaagaaagaaacctcgCGCGTGAGGTGTTTGGTAGCAGCGCGGAGACTGGGACAAGATGGCGGACGTGGTGGCGGATGGAGAGAAACTCAGTAAAAAGACCTGCGCATCATGTTGACGCTGGTCAGAGCAGCCAGGCAGCCCGTGTGCCGGGCCGTCGGGTTACGGGTGCAGAAGTTTGCGCCCCACGTTCAGCAAACGGTGCCTTCGCTTATTGAAGGATGTCGCTGGAGAGGTGACAAAAGtgagctgAAGAGGCGCATGAAGGCGGAGAAGAAGGCTGCGGAGAAGGAGGCCAAGCTCAAGGACCAAGCGCAGCAGAACAAGGAGGCGAGTGATAAGCAGGAGCAGCATGTGGACGGAGTGGACGAGGAGACACTGGACCCCAACCAATACTTCAAGATCCGCACGCAGGCCATCCAGGCTCTGAAGGGAACCGCTGAAGACCCCTATCCCCACAAGTTTCACGTGGACATGTCGCTTACTGAGTACATAGAGAAATACAATCACCTACAGCCCGGGGAGCAGCTATCAGACGTCGTCCTTAACGTGTCAGGTCGTGTCCATGCCAAGAGGGCCTCAGGGGCCAAACTGCTCTTCTATGACCTGAGAGGAGAGGGGGTCAAGCTGCAGGTTATGGCGAACTCCAGGAATTACAAGTCAGAGGAAGACTTCGTTCACATCAACAATAAATTGCGCCGAGGTGACATCATCGGCGTTCGTGGTAATCCTGGGAAGACAAAGAAAGGCGAGCTGAGCATCATCCCCATAGAGATGACCCTGCTGTCTCCGTGTCTGCACATGCTTCCTCACCTGCATTTCGGCCTGAAGGACAAGGAAACTCGGTTTCGTCAGCGGTATTTGGATTTGATCTTGAACGACTTTGTGAGGCAAAAGTTTGTGACCCGCGCCAAGATCATCACTTACCTGCGCAGCTTCTTGGACCAGCTTGGTTTCCTTGAGgTCGAGACTCCGATGATGAACCTGATTCCTGGAGGCGCAGTGGCTCGACCTTTTGTCACCTACCACAATGAGCTGGATATGAACCTGTACATGAGGATCGCGCCCGAGCTTTACCACAAGATGCTGGTGGTTGGAGGTATCGACCGTATCTATGAAATCGGTCGTCAATTTAGAAACGAAGGCATTGACCTCACTCACAACCCAGAGTTCACTACGTGTGAGTTTTATATGGCCTACGCTGACTACAATGATGTGATGGAGATCACTGAGAAGCTTCTCTCAGGAATGGTGAAGCACATCACAGGAGGTTATAAGGTCACCTATCACCCTGATGGACCAGAAGGACAAGCCTATGAAATCGACTTTACTCCTCCTTTTAAGAGAATCAGCATGACCCATGATCTGGAAAAGGAGATGGGAGTGAAATTCCCAGCCACTGACGCTTATGATTCTGATGAAACCCGCAAATTCTTTGATGATTTGTGTGTTCAGAAGGGAGTGGAATGTCCGCCTCCAAGAACAACAGCTCGCCTCCTGGAtaagTTGGTGGGAGATTTCCTCGAGGTGAAATGCATCAGCCCTACGTTTATTTGTGACCACCCTCAGCTCATGAGTCCACTAGCAAAATGGCACAGATCCCAGAAAGGGCTGACTGAGCGTTTTGAGCTCTTTGTCATGAAGAAAGAAATCTGTAACGCCTACACTGAGTTGAACGACCCGATCAGGCAGCGTGAGCTCTTTGAGCAGCAGGCTAAGGCGAAGGCAGAAGGTGATGATGAGGCCATGTTTATAGATGAGACATTCTGCACAGCGTTAGAATATGGTCTTCCACCTACTGCAGGCTGGGGCATGGGCATCGACCGCCTCGCCATGTTCCTCACTGACTCCAACAACATCAagGAGGTCCTTCTCTTCCCCGCCATGAAGCCTGATGACCAGAAACCCGCCCCTCCAGCAGAGGGCACTTCTGTTTAA

Function

symbol description
kars Enables several functions, including ATP binding activity; lysine-tRNA ligase activity; and tRNA binding activity. Involved in several processes, including ERK1 and ERK2 cascade; diadenosine tetraphosphate biosynthetic process; and lysyl-tRNA aminoacylation. Located in cytosol and nucleus. Part of aminoacyl-tRNA synthetase multienzyme complex. Biomarker of sciatic neuropathy. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease recessive intermediate B and autosomal recessive nonsyndromic deafness 89. Orthologous to human KARS1 (lysyl-tRNA synthetase 1).

NR:

description
lysine--tRNA ligase-like isoform X1

GO:

id name namespace
GO:0006430 lysyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004824 lysine-tRNA ligase activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K04567 KARS, lysS; lysyl-tRNA synthetase, class II

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930654.2 False 1834 mRNA 0.51 14 3155959 3167279
XM_034308871.1 True 2245 mRNA 0.49 14 3155541 3164360
XM_034308872.1 False 1960 mRNA 0.52 15 3155959 3167259

Neighbor

gene id symbol gene type direction distance location
gcshb LOC108270992 coding downstream 3430 3144782 ~ 3152111 (-)
rpl13 rpl13 coding downstream 13544 3136436 ~ 3141997 (-)
LOC113536794 NA coding downstream 15380 3140070 ~ 3140161 (-)
LOC113536793 NA coding downstream 16634 3138827 ~ 3138907 (-)
cpne7 cpne7,LOC107715467,LOC107738346 coding downstream 26896 3075978 ~ 3128645 (-)
nfat5b LOC108271072 coding upstream 2044 3169323 ~ 3219284 (-)
pkd1l2b NA coding upstream 66791 3234070 ~ 3252896 (-)
LOC113536785 NA coding upstream 101165 3268444 ~ 3269415 (-)
LOC113536784 LOC108270651,LOC108276727 coding upstream 109584 3276863 ~ 3277834 (-)
LOC113536796 NA coding upstream 133860 3301139 ~ 3301270 (-)
G175213 NA non-coding downstream 147879 3007004 ~ 3007662 (-)
G175046 NA non-coding downstream 388936 2760210 ~ 2766605 (-)
G175045 zfhx3,LOC107738341,LOC107659104 non-coding downstream 395715 2756832 ~ 2759826 (-)
G175110 NA non-coding downstream 424668 2729695 ~ 2730873 (-)
G175109 NA non-coding downstream 429788 2725094 ~ 2725753 (-)
G175329 NA non-coding upstream 37978 3205257 ~ 3205466 (-)
G175330 NA non-coding upstream 39472 3206751 ~ 3206971 (-)
G175333 NA non-coding upstream 42868 3210147 ~ 3210404 (-)
G175483 NA non-coding upstream 344712 3511991 ~ 3512232 (-)
LOC113536694 NA non-coding upstream 405379 3572658 ~ 3577973 (-)
G175048 zfhx3,LOC107679901,LOC107565374,LOC107738341 other downstream 399016 2754355 ~ 2756525 (-)
G175098 NA other downstream 552330 2602414 ~ 2603211 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other downstream 1133310 2014722 ~ 2022231 (-)
cd82a cd82 other downstream 1222319 1856883 ~ 1933222 (-)
G174247 fbxo22 other downstream 2096307 1057656 ~ 1059234 (-)
serf2 NA other upstream 382586 3549865 ~ 3581987 (-)
G175497 NA other upstream 402062 3569341 ~ 3572262 (-)
mical2a mical2 other upstream 684568 3851847 ~ 3909893 (-)
bola3 bola3,LOC107686851,LOC107727091 other upstream 825447 3992726 ~ 3996453 (-)
lto1 oraov1 other upstream 1331667 4498946 ~ 4504329 (-)

Expression


Co-expression Network