LOC113536623 (LOC108270986,LOC105889116,LOC107659108)


Basic Information

Item Value
gene id LOC113536623
gene name LOC108270986,LOC105889116,LOC107659108
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3003935 ~ 3008616 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930686.2
ACCTCTGCACGAGCTGCTTCTATGTGTGGCAGttgaactgaagacagctgagTTAGCTGTGTAGCGACGCTAGCAGACGTCGGTTGGGATAAAAAGTCACGGGTGTAGGTGTCGGAACCGGAGCTAGCTTAGCCAGCCAGCATGGGGGAGGAAATGGAGAACATGTCAGTAAACACGAGCTCGAAGACGGAGGATGAGAATCATGTACCTGCGGAGGACGGTGCTGTGAAATATTACACGCGCGATGAGGTTCAAGCTCATAACATGAGCAAAGACACATGGCTGATTATCCACGATAAAGTTTACGATATTACAAGTTTCCTCGAAGAGCATCCGGGAGGTGAAGAAGTGCTCCTGGAGCAGGCAGGGTCGGATGCAACCGAGAGCTTTGAGGACGTCGGCCATTCCACAGACGCCAGAGAGATGCTCCAGCAGTACTACATCGGAGAGCTGCACGAGgatgacagaaagaaagagactaAAAAGgAAGTTTATATCACAACTTCAAAAGAGTCCAGTTCGTGGAGCACCTGGCTGATTCCTGCCGTAGCGGTGGCTGTTGTAGGCTTTATGTATCGTTATTACATGCTAGAGCACAAATCATCTTGAGCACGACTCAGCAGCTCCTGGATTCCTGAAAGTGTCTCAGCACAGCGCTTACCGGTACGAGATTACCCAGCAGTACCTGACAGTCTGATTGGTTTGGGATCAGGATCCAGGCCAGCGCAgcgcttttctctctctttcatccagAGGCCTTGAACTTCTCTCTCtgatcccacacacacacacacacacacacacactcacacacactctcacacacacaacacaatgtCTGACCATCACTGCCCTTCTCATGCCAGCGAGTTTACCAGGAACGCGAGGAATCACAGAATTACgctttcttgtctttttttttttttttttttttttttt

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K23490 CYB5; cytochrome b5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930686.2 True 939 mRNA 0.49 5 3003935 3008616

Neighbor

gene id symbol gene type direction distance location
dhx38 dhx38,LOC106562086,LOC106587179 coding downstream 6827 2976459 ~ 2997108 (-)
hnf4b LOC108271394,LOC108429112 coding downstream 687800 2301621 ~ 2316135 (-)
marveld3 marveld3 coding downstream 821550 2178548 ~ 2182385 (-)
LOC113536684 znf821 coding downstream 931662 2054212 ~ 2072273 (-)
LOC113536364 LOC108271342 coding downstream 993313 1996794 ~ 2010622 (-)
zgc:162592 LOC108270985 coding upstream 11938 3020554 ~ 3023480 (-)
cpne7 cpne7,LOC107715467,LOC107738346 coding upstream 67362 3075978 ~ 3128645 (-)
rpl13 rpl13 coding upstream 127820 3136436 ~ 3141997 (-)
LOC113536793 NA coding upstream 130211 3138827 ~ 3138907 (-)
LOC113536794 NA coding upstream 131454 3140070 ~ 3140161 (-)
G175046 NA non-coding downstream 237330 2760210 ~ 2766605 (-)
G175045 zfhx3,LOC107738341,LOC107659104 non-coding downstream 244109 2756832 ~ 2759826 (-)
G175110 NA non-coding downstream 273062 2729695 ~ 2730873 (-)
G175109 NA non-coding downstream 278182 2725094 ~ 2725753 (-)
G175050 NA non-coding downstream 296052 2613845 ~ 2707883 (-)
G175329 NA non-coding upstream 196641 3205257 ~ 3205466 (-)
G175330 NA non-coding upstream 198135 3206751 ~ 3206971 (-)
G175333 NA non-coding upstream 201531 3210147 ~ 3210404 (-)
G175483 NA non-coding upstream 503375 3511991 ~ 3512232 (-)
LOC113536694 NA non-coding upstream 564042 3572658 ~ 3577973 (-)
G175048 zfhx3,LOC107679901,LOC107565374,LOC107738341 other downstream 247410 2754355 ~ 2756525 (-)
G175098 NA other downstream 400724 2602414 ~ 2603211 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other downstream 981704 2014722 ~ 2022231 (-)
cd82a cd82 other downstream 1070713 1856883 ~ 1933222 (-)
G174247 fbxo22 other downstream 1944701 1057656 ~ 1059234 (-)
serf2 NA other upstream 541249 3549865 ~ 3581987 (-)
G175497 NA other upstream 560725 3569341 ~ 3572262 (-)
mical2a mical2 other upstream 843231 3851847 ~ 3909893 (-)
bola3 bola3,LOC107686851,LOC107727091 other upstream 984110 3992726 ~ 3996453 (-)
lto1 oraov1 other upstream 1490330 4498946 ~ 4504329 (-)

Expression


Co-expression Network