lmo1 (lmo1,rbtn1,LOC107085592,LOC107593328)


Basic Information

Item Value
gene id lmo1
gene name lmo1,rbtn1,LOC107085592,LOC107593328
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 299224 ~ 335808 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930689.2
CGAGCGCGTGGAGCACCGAGCGCATAAATTGTGCGCGCGAAAGGGGCAGAGAACGGCAGCGCGAGCGATGCGTTTCAGCCGCTCTGTCATCTCCTACATACACTCcggatttcatttttttctccacctcctttttctttctttccttccagcACCACCGGAGCCGGTTCGGTTCGGTTCGGTTCGGTTGTacgttttgttgtttgtttgtttgtttgtttgtttttcccctttttgaAGTTTTAGGTCTTGCTCGGATCGGAATGTAGCCGTCACGCGCACGTCtcggggtttttttttgtttactcgACTTGTGCGGATGTGTGCACGACCGGAGACCCTCACAGACCCTCACAGAACCTCCGAGAACCTCCGAGAACCTCACAGAACCTTACAGAACCTTACAGAACCTTACAGAACGTGACTGAAACGGAACAGCacgacgcacacacacgcgcgcgcggaGCCTGCAGCAGCACGCGGACCCTTTTTTCTattatcattttcattattttattttaaaccgagagagagagagagagagagagagagagaggagaagaataGGAAGaataggaagaagaagaagagaaccCTGCTGGATCCGAGAGCGGAGCGTCCTGAGCCGGACTCCTCCTCATTCCTCAGGACCATGGTGTTGGACAAGGAAGAGGGAGTGCCGATGCTCTCCGTCCAGCCCAAAGGCAAGCAGAAGGGCTGCGCTGGCTGCAACCGCAAGATTAAAGACCGCTACCTGCTCAAGGCGCTGGACAAATACTGGCACGAAGACTGCCTGAAGTGCGCGTGCTGCGACTGCCGCCTGGGCGAGGTCGGCTCCACCCTCTACACCAAAGCCAATCTCATCCTCTGTCGCAGAGACTACCTGAGGCTCTTCGGGACGACGGGGAACTGTGCAGCCTGCAGTAAACTGATCCCCGCGTTTGAAATGGTGATGAGGGCCAGAGATAATGTTTACCATTTGGACTGTTTTGCCTGTCAGCTTTGTAACCAGAGGTTCTGCGTAGGCGACAAGTTTTTCCTAAAGAACAACATGATCCTGTGTCAGATGGACTATGAGGAGGGCCAGCTCAACGGCAGCTTCGAGACGCAGGTCCAATAACGCCAACCTGGCGGaggcagcagcacacacacacacacacacacacacacacacacacacacacacactcacactcacacacacagggaggagCGTCTGTCTGCTTGCCTGCAATACTTTTTACAGTAAAAGAAGCCCTCGTTGGTCCTTTAGGACTCTGGTGTAAATGTTCTACTTTTTGGCCTTTTCCTCGACTCGAGCATTTATAAGTTCTGATGTACAGTCGTGCCTGCGTCGCTGAGCACCGTATCGCCTGTAtgggtttttgtgatgttttttcttttattcctcaTTCCTCACGGTTAGGATGGTAAGATGGAGGCTGATGtacagtctgtttttttctgtatatatatataaactggaacatttattttatgaaattgtAATGCAATTTTATTACTAGTGtgaattaaagaacaaaacacgATTCTTAAATGTT

Function

symbol description
lmo1 Predicted to enable metal ion binding activity. Predicted to be located in nucleus. Is expressed in several structures, including anterior axial hypoblast; brain; neural tube; pancreas primordium; and presumptive diencephalon. Orthologous to human LMO1 (LIM domain only 1).

NR:

description
PREDICTED: rhombotin-1

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24098 LMO1_3; rhombotin-1/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930689.2 True 1562 mRNA 0.50 4 299224 335808

Neighbor

gene id symbol gene type direction distance location
ric3a NA coding downstream 26652 267730 ~ 272572 (-)
pde3b pde3b coding downstream 203094 45726 ~ 96130 (-)
stk33 stk33,LOC106562365 coding upstream 112809 448617 ~ 470183 (-)
rerglb rerglb,LOC108271353,LOC108429104,LOC107674441,LOC107593310,LOC107586038 coding upstream 138023 473831 ~ 480942 (-)
trim66 trim66,LOC107750616 coding upstream 150837 486645 ~ 511403 (-)
dennd2b st5 coding upstream 178348 514156 ~ 584811 (-)
tmem9b tmem9b,LOC107700603,LOC107585953,LOC107754675,LOC107750540,LOC107674442 coding upstream 256995 592803 ~ 602182 (-)
G173639 NA non-coding downstream 32686 263184 ~ 266538 (-)
G173586 NA non-coding downstream 83763 155542 ~ 215461 (-)
G173603 NA non-coding downstream 112062 185451 ~ 187162 (-)
G173602 NA non-coding downstream 113410 184027 ~ 185814 (-)
G173581 NA non-coding downstream 160088 138193 ~ 139136 (-)
G173685 NA non-coding upstream 120056 455864 ~ 456185 (-)
G174054 NA non-coding upstream 170974 506782 ~ 519973 (-)
G174074 NA non-coding upstream 232605 568413 ~ 569242 (-)
G174127 NA non-coding upstream 460586 796394 ~ 798832 (-)
G174147 NA non-coding upstream 487831 823639 ~ 823896 (-)
calca calca,LOC108271361,LOC107700617,LOC107593372,LOC107688176,LOC107750650,LOC107586036 other downstream 265058 30281 ~ 34166 (-)
G174207 LOC108270943,LOC108444425 other upstream 625688 961496 ~ 963078 (-)
fbxl8 fbxl8 other upstream 663251 999059 ~ 1003032 (-)
G174247 fbxo22 other upstream 721848 1057656 ~ 1059234 (-)
cd82a cd82 other upstream 1521075 1856883 ~ 1933222 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other upstream 1678914 2014722 ~ 2022231 (-)

Expression


Co-expression Network