zgc:162592 (LOC108270985)



Basic Information


Item Value
gene id zgc:162592
gene name LOC108270985
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3020554 ~ 3023480 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026930760.2
TTAAAGTTGGATTTGTCCcaggtgttgatttttttccccctgaataTTTGTTTGTATCCTGAAACTTAGACCCGCGGGCGCTTCTACACTCTTCCAGTCTTTTTTCCCTTCCAGCTGATCTGAAGTAAGAGCTTTATGAAGTGATCATGAGCACCTTGTGGGCTTcatgtgtgtagtgtgaacTCCAGCATGATGAGCAGTAACGCCTCGCTACCCGGTGACCTGGACGAGTTAGATGTTAAAGGCACGGACACGCTGAAGCTGCTGGAGGCTCACCGGCCCATTAAGATCGGGATTATTTTGCTTCTGGGTGTAATGATCACTTTGGGGAACGTGGCCGTGGTGTCGGTGATTTACTCCGCGGTACCGGGATGGTCGCGCAACTCGCGATACTTTTTATTATCGTTAACCGGCGCGGACTCGGCGTTCGGTTTGATCGTCATGCCGCTGAACCTGTGCGTGAGTCTGCTGAAGGACTACAGCGATGAACCCGACCCGTTCTGTCACGTGGTGGCCTTCTTTAACGCCACCGTTTACTCCACGTGCATGTACACGCTGGCCAGCATCAGCGTGGAGCGCTACGTGGCCGTGTTTTACCCGCTGCAGTACTCCACCATGCTGACCCGGAGGCGCGCGCTGCTGCTCATCGCCTTCGCCTGGCTCTTCCCTCCGGTCCTGCTCGTGCCCATCTCGTGCCCGGAGGGAATCATAGACGTGTACTTCTCCTCGGCATCCCTGGTGTGCAACCCGTCCTACTCCAGCAACGTGACGTACTCTCTGAGCCTCACCGGCTTCATCTTCTTCCCCTGCTCGGCCCTCATGACCTTCTGTAACCTCAGGCTGTGGGTCGCCGCCAGGAGGCAGCGGAGGAAGCTGAGGACACACGGCTCGGCTCGATGGACTAGACCTAACGTGGCCTCGCGCGTGCTCGTGCCCGTCATGACCGCCTACTACACGTGCTGGACCCCCTGCATGGTCATCATGATCTACACCGCGATATCAGGCAGCAGTGTCCCGGAGTGGGTGGAATTTGTGGCCGTGTGGTTACCGACGTCCAACGGCTTCCTCAACTGTATCTTTTACTTTTGGATTAACCAGAGCTTCAGGAGAAAGTTCCACTTGGTTCTGCAGAGACTGTGTTTCAGACTTTGTCCCGATGCCAAACCCGTACATGACTCGGTGATGGCtactttaaataacaacacCGTGCACGAGAGGTCTTCCAGCGTGTCGTCCACGTGCACTTTACTCACGATCGCTGTCGAGAACTACATCTGACAGCCAGGAACCAAGTGGACATCAAACAGCTGGGCATCCAGAGCTAGAAATTACTTTCTCTGACCTGTGGGAATCAGCAAGGGCTAATGACGCACCTGTGGATCACTGGTATGGTTCATTTTCAACCTCCATAGTCATGCAGACTTTTAGCTTGTGGGCAAATTGTGCCTTTTTACATTCACTGCACTTTTGCACTGTAATTATTTCATtcctgggtgtttttttttttttttttt

Function


NR:

description
probable G-protein coupled receptor 52

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026930760.2 True 1514 mRNA 0.53 2 3020554 3023480

Neighbor


gene id symbol gene type direction distance location
LOC113536623 LOC108270986,LOC105889116,LOC107659108 coding downstream 11938 3003935 ~ 3008616 (-)
dhx38 dhx38,LOC106562086,LOC106587179 coding downstream 23446 2976459 ~ 2997108 (-)
hnf4b LOC108271394,LOC108429112 coding downstream 704419 2301621 ~ 2316135 (-)
marveld3 marveld3 coding downstream 838169 2178548 ~ 2182385 (-)
LOC113536684 znf821 coding downstream 948281 2054212 ~ 2072273 (-)
cpne7 cpne7,LOC107715467,LOC107738346 coding upstream 52498 3075978 ~ 3128645 (-)
rpl13 rpl13 coding upstream 112956 3136436 ~ 3141997 (-)
LOC113536793 NA coding upstream 115347 3138827 ~ 3138907 (-)
LOC113536794 NA coding upstream 116590 3140070 ~ 3140161 (-)
gcshb LOC108270992 coding upstream 121302 3144782 ~ 3152111 (-)
G175213 NA non-coding downstream 12892 3007004 ~ 3007662 (-)
G175046 NA non-coding downstream 253949 2760210 ~ 2766605 (-)
G175045 zfhx3,LOC107738341,LOC107659104 non-coding downstream 260728 2756832 ~ 2759826 (-)
G175110 NA non-coding downstream 289681 2729695 ~ 2730873 (-)
G175109 NA non-coding downstream 294801 2725094 ~ 2725753 (-)
G175329 NA non-coding upstream 181777 3205257 ~ 3205466 (-)
G175330 NA non-coding upstream 183271 3206751 ~ 3206971 (-)
G175333 NA non-coding upstream 186667 3210147 ~ 3210404 (-)
G175483 NA non-coding upstream 488511 3511991 ~ 3512232 (-)
LOC113536694 NA non-coding upstream 549178 3572658 ~ 3577973 (-)
G175048 zfhx3,LOC107679901,LOC107565374,LOC107738341 other downstream 264029 2754355 ~ 2756525 (-)
G175098 NA other downstream 417343 2602414 ~ 2603211 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other downstream 998323 2014722 ~ 2022231 (-)
cd82a cd82 other downstream 1087332 1856883 ~ 1933222 (-)
G174247 fbxo22 other downstream 1961320 1057656 ~ 1059234 (-)
serf2 NA other upstream 526385 3549865 ~ 3581987 (-)
G175497 NA other upstream 545861 3569341 ~ 3572262 (-)
mical2a mical2 other upstream 828367 3851847 ~ 3909893 (-)
bola3 bola3,LOC107686851,LOC107727091 other upstream 969246 3992726 ~ 3996453 (-)
lto1 oraov1 other upstream 1475466 4498946 ~ 4504329 (-)

Expression



Co-expression Network