cpne7 (cpne7,LOC107715467,LOC107738346)


Basic Information

Item Value
gene id cpne7
gene name cpne7,LOC107715467,LOC107738346
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3075978 ~ 3128645 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930842.2
tTCTCCGCGCGCGCTTTCCCacccttcctcttcctcctccctcactctctccaaCTGCGCGCTGAGTTTGGGAAATTTTCAGCAGCTCAGGAGGAAGCATTTGAGCCAGAAGTCAGCGGCGTCAGCAGGAGGGTTCCGCTGTGGCAGAGACAGCGATCTCATCCTAATGTTCCTCCAGAACAGCTCATGTGACATCTCCGTGTAACCCCACCTCAACCACAGAGAACCTGCGACAGAGATGAGCGCTTCTCCTGCTTCCTTAACCAGTGGATGTCTTTAAATCATCTCGATAGCTGTTCCTTTGCAAATTCCGACTCTCCCTTCTTTCCCTGTCCGCTCTCTCCGGTTGCTTTTGCACTCTTCCACACTGAGTCAGAATGAGTGAATCGCAGGAAGCGAGTTCTCCTGTGGCCGGGATCGGTGGCCCGGCGGCCTGCGTCACTAAAGTGGAGCTGCGAGTGTCTTGCAAAGCCCTGCTGGACCGCGACACACTGAAAAAGTCCGACCCCTGCGTCATCCTCTTGGTGCAGAGCCAAGGCCAGTGGACTGAGCTGGATCGCACTGAGGTGATCAAGAGCAACCTGAATCCAGTGTTTGCCAAAGTCCTAATGTTAGATTACTACTTTGAGGAGGTGCAGAAGCTGCGCTTCGAAGTCTACGACATTCACGGGACCCACAGCATCGGTACTCGCGATGATGACTTCCTGGGAGGGATGGAGTGCACACTCGGTCAGATAGTGGCTCAGAAAAAGATGGTGAAGCCATTGCTACTGAAATATGGAAAATACGCCGGAAAGTCTAACATTACGATTCATGCTGAGGAAATTTCTGGCAACAATGGATACGTCGAGCTCTCGTTCTGTGCCAAGAAGTTGGATGATAAGGATCTTTTCAGCAAATCCGATCCATTCTTGGAGATTTATCGTGTGAACGATGACAGCACAGAGCAGCTTGTACACAGAACAGAAGTGATCAAGAACAACCTGAACCCCGTGTGGCAGCCGTTTAAAGTCTCCCTCATTTCCCTGTGCAGCTGCGATGAGGACAGGAAGCTAAAGTGCCTGGTGTGGGATTATGACTCGAGAGGGAAGCATGACTTCATTGGCGAGTTTTACGCCACGTTCAAAGAGATGCAGCAAGTTTCTGGAGGAAACAAGGTCACATGGGACTGCGTGAACCCAAAATACAAAGTAAAGAAGAAGAACTACAAGAACTCTGGCCTGGTCATCCTCACGGATCTGAAGCTCCACAGAGTTTACTCCTTCCTGGACTACATAATGGGAGGATGCCAGATACACTTTACAGTTGCCATTGATTTCACGGCGTCAAACGGAGACCCCCGCAATAGCTGCTCCCTCCACTACATCAACCCGTACCAGCCCAATGAGTACCTGAAGGCTTTGATAGCTGTGGGTGAGATCTGCCAGGATTATGACAGTGACAAAAGGTTCTCTGCTCTGGGCTTCGGTGCACGAATTCCACCCAATTACGAGGTGTCGCATGACTTTGCCATCAATTTCAATccagatgatgatgaatgtgaaGAGATTCAGGGGGTGGTAGAAGCTTACCAGAACTGCCTGCCCAAGATCCAGCTCTACGGACCAACTAATGTGGCTCCTATAATCAGCAGAATAGGCAAGCAAGCAGCAGGGAAGGAGCCCATTAAAGACGCATCTAAATACCACATCTTGCTGATCCTCACGGATGGCGTGGTGACCGACATGGCGGACACGCGGGAGGCCATCGTGCGTGCCTCCTACCAGCCTCTGTCCATCATCATCGTGGGTGTGGGAAACGCCGACTTCACTGACATGCAGATCCTGGACGGGGATGATGGTGTCCTGCGCTCTCCTAAAGGAGAACCTGTCCTGAGGGACATTGTCCAATTTGTGCCCTTCAGAGACTTTAAAACGgcGTCTCCTGCTGCACTGGCGAAGTGCGTCTTGGCCGAGGTGCCCAAGCAGGTCGTCGAGTACTTCAGCCATAAGGCCATTCCTCCCATGAATCCTGTTTTAGACTCGACACCCAGCTCCATCGCCAACACCCCAGATTAACACGTCTACCCGAGTCCTGACCTCCGCTCTGTCCCTTCACACCTCCGAGTGCGAGATCCGAGAACAACCACCGCCACAAACACAACATTGCCGTTCCGTTTCCCTGTTTATACATAACGTGTTTACACAGAAGGAGGATTAGTTCTTCTTGGACCGTGTCCCGTGTTTGGCATCATGCCTACATCTTCATTATCTGTGCTGGAATCTTCATATGGACCTTCTCACCACAGTTCCAGGCCTCTGACCTGCTGCAAGCTCTCTGCAACTTCTCCGCCAAGGCCATCtcttaattcttaattctgatgtgtatttttttttaaatcctgtgcCTTGCAGGACCTTTTCAGTGTTTGCTCTGCCTGCCCACTGTGCTTATCTTCTTTGCCCCTGATTTTGTTCCTCGAGGCTTCTCGCTGGCCTCACACTACCCTGCTTTCAGCAAAAACAGACAGGATTATGTGTGGGGAGAATGGATGATCATGATCATTACTTGAAATTTATAAAGGTCTCTCCACAGATGGCTGGTCACGATATCTGTAACTCAGCATTACTTTTATGAAAGCATTATGGTTGAGCCTTATAGCATTGGATCCCCTCATAGGCATAAAACTATTGCgcatacacacaggaacacaggaaAAACAGAATGCTTGCCATTAGCTAGCTCTATCGctcaaaccacacaaaaaatATGTCATTTGTACTTTTATTGGACAATCCACCTTGTTCGTGTTTATTACACCCACAACTGTATTCCGTATGCACTCTTTCCATCACTGCTAATGACGTGTTATGGATGTGCCAGCAAAGCGGGCTTAAAAATGATGTACAGCCCTAATCCACATGAAATCTAGGGGATGTGTCAATCTCCTGACTGACTCACAACTGTCACTAATAgtctgcatgaatctacagtctgggctagaaagaattcagccccagcctcatttctcactttttcataccattctgtatgCTTTTCTAAGGACCTCTGGTCGTACTGTTGTGCTTGCTTCgacgaaaataatccactttaagccatttgttaacagcaaatcagaatACATAAGCCAAAAATCAGTCTTATGTATTTTTTCCATGGCAGAAAGAAAGGGCTTAGCCTAACTACCCCGTTTATATCAGCCGGCCTTGAAGGTatctttacatacagtatatctttacaatataaaaaaatatatatatatttggagaGGATCTGTAATGCGATGTGTAAACATGTCTAATCTAGTAGATCATAGCAAGATTATTAATTAagtctgaaagaaagaaatcatatCAGAAAGCGACCAAATGAGCAAAGctgcaattttaaaatgaattgttCTGGAAGAGTCTGAAATCTGAAACTGgtcaataattttttatttttttatttttttaacattgcatGTAGGTTGCAACTTAAAAAGACTTAGCATAACTTTTCCTCCAAACTCCTTAACATCTTTGGAGCATGTATCCAGCTTTTTTGACTGCCAGCGATACACGATTTCACAGATCAACCACAAGTCGATCTTTCTAGCAAGTCGAGCTTTCTATAAATGTTTGCTACACATAAAACCTCATTACATTAGACAAAAAACTAGTCCTGTTTGTTAATGCGTTCCAGTAGGAGGAATGGAGGAAAACAGCTAGCTTACTTAGACAGTTTAATATGGAAGGAATCAGGTTATTATTATTGGGATAAAGGAGTCCTGTAATGTGTTTTGTTCATCATATCATTAGCATTTTTGCTACCATGATATGCTCATCATTTTGCGAGTGCAGGCCACGCTGGCAAGTTACCGACATGAAAGGGGAGAACTCTGAGAACTTGCACTACTCTTGGGTAGAAGTTTTTGAATAGTAGGCAGGAGTTTTTGGACCTCTGCAAATATTCATCAAATTTTGAAGCAATTTGCTGCTTGACTTAATTTCCTACACTGTtagaaaaaatggttcttcaagggttctttggaagATTAACAGTTCAAGTCTCAACAGAAGCCtattgtgaaatggaaaccTACATAGAACATTGAGGGACTAAACTCTGACTCTTTAGGGTACCAGATTGGACCTTTTATttcctgtatactgtatgtgtctgAACATGACTGTATCAGTAAAACAAACACCACTGCCAGGTCTTTGGAAACCTAAGTCATCATATTAAGGCTACATAGACATATGCAGAATGGATAAACGCAGTGATTGTACCGTCAAAccattgttctgttttttgaGCACTGATTTGCATGCGCTGAACTAATATACTGAATATTTCATCAGTATGATCACTATGTGTACACTGTGGTATGATATAAAAGGCTGTAGAAAGTGTATAATCAGTTTCCATTTACAGTTAGCAAATTCAACAttccttctcttctctactcATATTGTTGTATATgttgcagaggaaaaaaaaaaggtttatcaGCTGAAATCGTGTGAACAGAAACATTTCTTTGTGAATAAGCAGACTGGATAAGCAGAAACAGTCTATTAATAGAATCGGGTCAGTGCACTTTCTTCAGTCTGGACTCGAAAGGTCAAGCCGAGCtgattgtttcatttaattGGTGAATAAACTCTATGCATGTTAATAAGTGACTTCagagaggtggtggtggtgggaaGGGGGAGTAATTATTCATCTTTAACAACTAATACTAAAGATATGCAGCTACAAGGACCACACAAGGAATGTAGCTAGGTAGGAAGGTTTGTAGATTACACAAAGGACACCAACAAGGGGAGTgaattatgtaaagaataaaacatgacgttctgttgtaggaaaatagtcaatgaTGAAATTTATTCTTCTCATATTATAGCACAACGTTTTTTctccctcttataccacagagacCAATTTGCcaattttgtattaattaaagaaccaCACATCGTACGTTTTACCCcgttatagttacttttaatactgtggaatgtccgtgatacacgttagttcctgttatcattccCTCAATTTCTCTTGTTagttaataaaccaaaaaaaattgcagcttgttactgaaaaaccacaTAATATACAACATCCTTAGACTTTCCCGTGGCTgaaaaattactgactgttacaaagcactgacactggagactccttccattaatgtataaaagtctccttacagaaaacttcaccatatcaa

Function

symbol description
cpne7 Predicted to enable calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion. Predicted to be active in plasma membrane. Orthologous to human CPNE7 (copine 7).

NR:

description
PREDICTED: copine-7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930842.2 True 5236 mRNA 0.44 16 3075978 3128645

Neighbor

gene id symbol gene type direction distance location
zgc:162592 LOC108270985 coding downstream 52498 3020554 ~ 3023480 (-)
LOC113536623 LOC108270986,LOC105889116,LOC107659108 coding downstream 67362 3003935 ~ 3008616 (-)
dhx38 dhx38,LOC106562086,LOC106587179 coding downstream 78870 2976459 ~ 2997108 (-)
hnf4b LOC108271394,LOC108429112 coding downstream 759843 2301621 ~ 2316135 (-)
marveld3 marveld3 coding downstream 893593 2178548 ~ 2182385 (-)
rpl13 rpl13 coding upstream 7791 3136436 ~ 3141997 (-)
LOC113536793 NA coding upstream 10182 3138827 ~ 3138907 (-)
LOC113536794 NA coding upstream 11425 3140070 ~ 3140161 (-)
gcshb LOC108270992 coding upstream 16137 3144782 ~ 3152111 (-)
kars1 kars,LOC102775760 coding upstream 26896 3155541 ~ 3167279 (-)
G175213 NA non-coding downstream 68316 3007004 ~ 3007662 (-)
G175046 NA non-coding downstream 309373 2760210 ~ 2766605 (-)
G175045 zfhx3,LOC107738341,LOC107659104 non-coding downstream 316152 2756832 ~ 2759826 (-)
G175110 NA non-coding downstream 345105 2729695 ~ 2730873 (-)
G175109 NA non-coding downstream 350225 2725094 ~ 2725753 (-)
G175329 NA non-coding upstream 76612 3205257 ~ 3205466 (-)
G175330 NA non-coding upstream 78106 3206751 ~ 3206971 (-)
G175333 NA non-coding upstream 81502 3210147 ~ 3210404 (-)
G175483 NA non-coding upstream 383346 3511991 ~ 3512232 (-)
LOC113536694 NA non-coding upstream 444013 3572658 ~ 3577973 (-)
G175048 zfhx3,LOC107679901,LOC107565374,LOC107738341 other downstream 319453 2754355 ~ 2756525 (-)
G175098 NA other downstream 472767 2602414 ~ 2603211 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other downstream 1053747 2014722 ~ 2022231 (-)
cd82a cd82 other downstream 1142756 1856883 ~ 1933222 (-)
G174247 fbxo22 other downstream 2016744 1057656 ~ 1059234 (-)
serf2 NA other upstream 421220 3549865 ~ 3581987 (-)
G175497 NA other upstream 440696 3569341 ~ 3572262 (-)
mical2a mical2 other upstream 723202 3851847 ~ 3909893 (-)
bola3 bola3,LOC107686851,LOC107727091 other upstream 864081 3992726 ~ 3996453 (-)
lto1 oraov1 other upstream 1370301 4498946 ~ 4504329 (-)

Expression


Co-expression Network