hnf4b (LOC108271394,LOC108429112)


Basic Information

Item Value
gene id hnf4b
gene name LOC108271394,LOC108429112
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 2301621 ~ 2316135 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930846.2
tcttttttccttgcTTCTGGACAGAACAATTCCACAAGAAGTCAGAGACACTGAGGCAAGCAATCGGCGATCTCCGAAGAGAGGAGAAGCACGCCATGGTGGTGAAAGTGAATTGAGGGATCGGCAGGAAAGCCTCCTGAAAGATTGGTGGCTTTTATCCCTTGACCTTTAATCTCCTGTGTAAAGAAGTAAAAGAACTTAAGGTCATCCATCCAGTCTGACTTGGAATTACGGTACCATGAAGATCTCTGAAGGAGCGCTGGACTTGGGCACCACGGATTACGCGGTGGCCCTGGACCCGAGCTACACCATGCTGGAGTTTGACAGCCTCAGAGTTCTCCCAGTGGACACAGAGCCGCTGAAGCCCGAGCCGTCCCCTGTAGCCACAGCAGGGCTGCCCCAATCCGCCGTGATGCTGTGCTCCATCTGCGCAGATAAAGCCACTGGGAAACACTACGGTGCGTCCAGCTGCGACGGCTGCAAGGGCTTCTTCAGGCGGAGTGTGCGCAAGAACCACGCCTACACATGCAGgttcaGTAGGCAGTGTGTGGTGGACAAGGACAAGAGGAATCAGTGTCGATACTGCAGACTACGGAAATGCTTCAGGGCTGGCATGAGGAAAGAAGCTGTACAGAACGAGCGAGACAGGATCAGCTGCCGTAGAGAATCTCAAGGGGTCGGGACTCTGACCATCAGCATCCTACTGAAAGCAGAAGAGAGCACACATCAGTTCTCCGGTCTGACTCCACCAATGACGGAAGTTATCACGAAGAAGATTGCTAGCCCACCCGACGTTTGCGAATCCATAAAACAGCAGCTCCTCCTCCTGGTGGAATGGGCGAAACGTATCCCAGAGTTCTGTGAGCTGCCAGTGGACGACAGGGTCAACTTGTTACGAGCTCACTCTGCTGAGCACCTCATCCTGGGCGTGGCTCGTCGTTCGCTACCCTACAACGATATAATCCTGCTAGGAAATGACTTCATCATCCCTGTGAATGGTCCAGAGCTGGAGATGTCCAAAGTGGCAGCACGTGTCTTAGAAGAGCTGGTCAGGCctctgagagagctggacataACGGACACAGAGTTCGCCTGTCTCAGAGCCATCGTCTTCTTCGCTCCAGACTGCCCAGGGCTGGAGTGTGCTCAGATGGTGCGCAGACTGCGTTTCCAGGCCCACGTGTTGCTGGACGAGGCGACATGCGAGCAGCGCGGCCGGTTTggggagctgctgctgctgctgcctccACTGCAGAGCACCGCCTGGCACATGGTGGAGCAGCTCCAGCTCGCCCGGCTGTTAGGAGAAGCCAGCGTGGACAGCCTGCTGCAGGAGATGCTGCTCGGAGAGTCAGCCACAGGCTCAAACCCAGAAGTGCTCGGTTTTAGCTCTCCTGCTGACCCGGTTCTGCCGCGGAATCTACAACCGGAACATGTGGCATTGCCAAACTTCACCTCCGTCATCCTCCCAGTACCGTCCTCTCTAGCTGGAGTTCCTCTGCTCGCCGTACAGCCAGGAGCTCAGctctacacacacgcaccagCTACAGAAATGACACTGGAGATAGACAGCTGTCTCACCAAGCCTGCAGTCCACACATGTCtctgagcagacagacagacacacacacacacacacacacacacacacacacacacacacacttcataacGCCGTCTTATCCAGTCctcctcacatacacactcacactgctaATGTTTGCTAATGTCCATGTATAATATGATGAATCTTAGTGCTTTACGTTCCCTCGTCATTTTTGATAAATACCtattaacacacatttttttctgatacCATTAATCATGTGAGAAACATAGTGTGAAGGAAACATGAACTGATTTTGTTTGTCACAAACAAAACTTGGAGGTTAAATAAATTATCACCAGCAGGGGGCGGTGAAATTTCTCAAAGCTCAGAGAAGACACAAAGTAGCCAACAACGTATTCAAATCTCATGCAGCTCATTGGAGGACGTTGTGACAACATCATTTTTTATCACTCttcttaaaatttcatttttgttagCTTTAGATAGATTGGAATAATTATCCGGTCGCATGTTACTGGATAAATGATGCCCCAAAAAATGTAGATTATATCGAttaatcatgtgagaaaatTTGCATGAAGGAAATTTGATCTGATTTCGCTTATCACATGGTGAAGAGTGtggagataaataaataaatcatcgCCAGCAGAGGGAGCTGATGGACCTGAACAGTTATGCCTACATCTTCTGAATTAGCAAACGAGCTGCATGTGACACCGTTGAGACGTAATTTAGACATAATTTGCGTAACTGTTAGGAAATcactgtggcataagaggaataaagcacgtCAGgatgcatgctgttataagaaattaacaacgacagggtggtatgatgaagcagagtcacttTACACCacagttgattaatttcccataacagcacatcccaaagtgttttcttcttcttataccacagcagtttaccaacaattacGCAAAATGCACAATTTATGTCACAGGTTTACGCATGTTTATCAGGTTTATACTTTACAGAGcacatttcttgttttttgccGTCATTTCTACCGTCACATGTTCAGTTTATAATCAGATCGGTTGCTTTATCGTCCTTAAATTGAATCCAAATCCAATAATTTTGTGCATGATGAGTTCTCTCTATTCCTGACTTTCTAATGTAGGGAATAGGGATATGGGAACACTTCACCTTTATATCGTCTGTATTTTTCTGTCAGGACACTTCAATAGgcataatactgtatatacacacatacatgcgcATACACCCGTactgtaattattacattttagttGTTGAATAAAGTTGAAAAGTCtgtttaca

Function

NR:

description
PREDICTED: hepatocyte nuclear factor 4-beta-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930846.2 True 2878 mRNA 0.47 10 2301621 2316135

Neighbor

gene id symbol gene type direction distance location
marveld3 marveld3 coding downstream 119236 2178548 ~ 2182385 (-)
LOC113536684 znf821 coding downstream 229348 2054212 ~ 2072273 (-)
LOC113536364 LOC108271342 coding downstream 290999 1996794 ~ 2010622 (-)
tp53i11a tp53i11,tp53i11a,LOC107687052,LOC108435353,LOC107671372 coding downstream 321942 1936826 ~ 1979679 (-)
tspan18a tspan18,tspan18a,LOC107585935,LOC107671373,LOC107593454,LOC107750555 coding downstream 427090 1832326 ~ 1874531 (-)
dhx38 dhx38,LOC106562086,LOC106587179 coding upstream 660324 2976459 ~ 2997108 (-)
LOC113536623 LOC108270986,LOC105889116,LOC107659108 coding upstream 687800 3003935 ~ 3008616 (-)
zgc:162592 LOC108270985 coding upstream 704419 3020554 ~ 3023480 (-)
cpne7 cpne7,LOC107715467,LOC107738346 coding upstream 759843 3075978 ~ 3128645 (-)
rpl13 rpl13 coding upstream 820301 3136436 ~ 3141997 (-)
G174708 NA non-coding downstream 24254 2277046 ~ 2277367 (-)
G174680 NA non-coding downstream 35874 2222613 ~ 2265747 (-)
G174674 NA non-coding downstream 94316 2174167 ~ 2207305 (-)
G174665 NA non-coding downstream 137758 2163636 ~ 2163863 (-)
G174632 NA non-coding downstream 227264 2074137 ~ 2074357 (-)
G174929 NA non-coding upstream 95537 2411672 ~ 2411967 (-)
G174949 NA non-coding upstream 122480 2438615 ~ 2438837 (-)
G174970 NA non-coding upstream 160500 2476635 ~ 2476835 (-)
G174987 NA non-coding upstream 174167 2490302 ~ 2490506 (-)
G175030 NA non-coding upstream 220495 2536630 ~ 2536840 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other downstream 279390 2014722 ~ 2022231 (-)
cd82a cd82 other downstream 368399 1856883 ~ 1933222 (-)
G174247 fbxo22 other downstream 1242387 1057656 ~ 1059234 (-)
fbxl8 fbxl8 other downstream 1298589 999059 ~ 1003032 (-)
G174207 LOC108270943,LOC108444425 other downstream 1338543 961496 ~ 963078 (-)
G175098 NA other upstream 286279 2602414 ~ 2603211 (-)
G175048 zfhx3,LOC107679901,LOC107565374,LOC107738341 other upstream 438220 2754355 ~ 2756525 (-)
serf2 NA other upstream 1233730 3549865 ~ 3581987 (-)
G175497 NA other upstream 1253206 3569341 ~ 3572262 (-)
mical2a mical2 other upstream 1535712 3851847 ~ 3909893 (-)

Expression


Co-expression Network