tspan18a (tspan18,tspan18a,LOC107585935,LOC107671373,LOC107593454,LOC107750555)


Basic Information

Item Value
gene id tspan18a
gene name tspan18,tspan18a,LOC107585935,LOC107671373,LOC107593454,LOC107750555
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 1832326 ~ 1874531 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930875.2
acacacacacacacacacacacacggctgagGCTCTGAGCTTGCAGTATCCGTGAGATGATCAGGAGCTACAGTGTGTTCACGCAGCTGCTACGTTTTCACGCCGTTTAGTCGCTGGGATTGCGTTCCTCTGCGTTCCTGTGCGTTCCTGCGCGTTCCTGTGCGTTCCTCTGCGTTCCTGTGCGTTCCTCTGCGTTCCTGCGCGTTCCTCTGCGTTCCTGCGCGTTGTGGAACCGGGTTCTTTGCCGCAGACCCTGGAGCGGATTAAAGCACATGatacacagacgAGGTGTGGAGAGAGCTTCTGAGAAACGTCACGGCTACTCACAGGGAGAGACATTTACAGGTACATATGGGGCAAGGAGACGCCTCTGCGAGAAGCACGGCCATGGAGGGCGACTGTCTCAGCTGTATCAAGTACCTCATGTTCATCTTTAACTTCTTCATATTCCTCGGTGGAGCGTTTTTACTCGGAGTGGGAATCTGGGTGCTGGTGGATCCTACAGGTTTCAGGGAGATCGTAGCAGCCAATCCTCTGCTCTTCACTGGAGTCTATGTGATCCTGGCCATGGGCTCCATGCTCTTCCTGCTCGGCTTCCTGGGCTGCTGTGGAGCCATACGGGAGAACAAGTGTCTGCTGCTGTTTTTCTTCCTGCTCATCCTTATCATATTCCTGGCAGAGCTCGCCGCGGCCATTTTGGCCTTCATATTCCGGGAGCATCTCACCAGAGATTATTTCACCAAGGAGCTGAAAGCACATTATCAAGGCAGCAACAACACGGACGTCTTCACCGCCACCTGGAACACCATCATGGCTACGTTTGAATGCTGCGGCGTGAACAGCGCCGATGATTTCGATCAGCAGAGCCTCTTCAGGCGCCTGAACCCCGGCAGAGCCGTTCCTGATGTCTGCTGCCTGAGGAACGAGCAGCTGATGAACGTGGACGAGTGTCTCAGGGGCAACATGCCCTTCCGCATCAAGGGCTGTTACTCGGCTGTGGTGGATTACTTCGAGGCGTACATCTACATGGCCGGAGCACTCGCTATCGTCGTCCTGACCATAGAAcTCTTCGCGATGGTGTTCGCCATGTGTTTGTTCCGAGGGATCCAGTAATCCGTCCATGTTCTGCAGAAGGACATTTCAAAAGACAAATGGCTCAAAAAGAAGACACGCTTGTATATACGTCGTCTCTCTGTTTCTGAGGTGCCCACAGTGACCAAATTGTACAGCTGGATCTTCCCTGGTTTTGTGAAACGAAGGAGAAAATTTCACTCCAGTAGTGACATCGTGTCGTGTTGCAGCCCTTTAACACGGATAGAGGAAGAACTTGCACTGACGTCTGAATGGATATTTATAGAGGACAGTTCATGTTTATACGGAATTAAATACACGTTTTACCTTCTTCACCACTGCATCGAGCCACACTAAAACTCTtttcacaatgtgtgtgtgtgtgtgtgtgtgatcagaagCCTACATCTTCTAtattgtatagtgttgtgtattgcaactgtgtatattttatgtgGTTTTAGTAATGTGTTGTATGCATTTGTACTTATATTCCTGATATCTGTTATATGTGACACTGAttggtattaaaaaaacaaaaa
>XM_026930876.2
acacacacacacacacacacacacggctgagGCTCTGAGCTTGCAGTATCCGTGAGATGATCAGGAGCTACAGTGTGTTCACGCAGCTGCTACGTTTTCACGCCGTTTAGTCGCTGGGATTGCGTTCCTCTGCGTTCCTGTGCGTTCCTGCGCGTTCCTGTGCGTTCCTCTGCGTTCCTGTGCGTTCCTCTGCGTTCCTGCGCGTTCCTCTGCGTTCCTGCGCGTTGTGGAACCGGGTTCTTTGCCGCAGACCCTGGAGCGGATTAAAGCACATGatacacagacgAGGTGTGGAGAGAGCTTCTGAGAAACGTCACGGCTACTCACAGGGAGAGACATTTACAGGGGCAAGGAGACGCCTCTGCGAGAAGCACGGCCATGGAGGGCGACTGTCTCAGCTGTATCAAGTACCTCATGTTCATCTTTAACTTCTTCATATTCCTCGGTGGAGCGTTTTTACTCGGAGTGGGAATCTGGGTGCTGGTGGATCCTACAGGTTTCAGGGAGATCGTAGCAGCCAATCCTCTGCTCTTCACTGGAGTCTATGTGATCCTGGCCATGGGCTCCATGCTCTTCCTGCTCGGCTTCCTGGGCTGCTGTGGAGCCATACGGGAGAACAAGTGTCTGCTGCTGTTTTTCTTCCTGCTCATCCTTATCATATTCCTGGCAGAGCTCGCCGCGGCCATTTTGGCCTTCATATTCCGGGAGCATCTCACCAGAGATTATTTCACCAAGGAGCTGAAAGCACATTATCAAGGCAGCAACAACACGGACGTCTTCACCGCCACCTGGAACACCATCATGGCTACGTTTGAATGCTGCGGCGTGAACAGCGCCGATGATTTCGATCAGCAGAGCCTCTTCAGGCGCCTGAACCCCGGCAGAGCCGTTCCTGATGTCTGCTGCCTGAGGAACGAGCAGCTGATGAACGTGGACGAGTGTCTCAGGGGCAACATGCCCTTCCGCATCAAGGGCTGTTACTCGGCTGTGGTGGATTACTTCGAGGCGTACATCTACATGGCCGGAGCACTCGCTATCGTCGTCCTGACCATAGAAcTCTTCGCGATGGTGTTCGCCATGTGTTTGTTCCGAGGGATCCAGTAATCCGTCCATGTTCTGCAGAAGGACATTTCAAAAGACAAATGGCTCAAAAAGAAGACACGCTTGTATATACGTCGTCTCTCTGTTTCTGAGGTGCCCACAGTGACCAAATTGTACAGCTGGATCTTCCCTGGTTTTGTGAAACGAAGGAGAAAATTTCACTCCAGTAGTGACATCGTGTCGTGTTGCAGCCCTTTAACACGGATAGAGGAAGAACTTGCACTGACGTCTGAATGGATATTTATAGAGGACAGTTCATGTTTATACGGAATTAAATACACGTTTTACCTTCTTCACCACTGCATCGAGCCACACTAAAACTCTtttcacaatgtgtgtgtgtgtgtgtgtgtgatcagaagCCTACATCTTCTAtattgtatagtgttgtgtattgcaactgtgtatattttatgtgGTTTTAGTAATGTGTTGTATGCATTTGTACTTATATTCCTGATATCTGTTATATGTGACACTGAttggtattaaaaaaacaaaaa

Function

symbol description
tspan18a Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TSPAN18 (tetraspanin 18).
tspan18 Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

NR:

description
PREDICTED: tetraspanin-18-like isoform X2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17353 TSPAN18; tetraspanin-18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930875.2 True 1613 mRNA 0.50 9 1832326 1874531
XM_026930876.2 False 1604 mRNA 0.50 9 1832326 1874531

Neighbor

gene id symbol gene type direction distance location
ext2 ext2,LOC107593432 coding downstream 1175 1777341 ~ 1831151 (-)
caprin1a caprin1,LOC108429133 coding downstream 145250 1667626 ~ 1687076 (-)
rps13 rps13,LOC107586033,LOC107700620,LOC106561079 coding downstream 178848 1647120 ~ 1653478 (-)
LOC113536795 NA coding downstream 184868 1647329 ~ 1647458 (-)
plekha7b plekha7 coding downstream 194064 1517346 ~ 1638262 (-)
tp53i11a tp53i11,tp53i11a,LOC107687052,LOC108435353,LOC107671372 coding upstream 62295 1936826 ~ 1979679 (-)
LOC113536364 LOC108271342 coding upstream 122263 1996794 ~ 2010622 (-)
LOC113536684 znf821 coding upstream 179681 2054212 ~ 2072273 (-)
marveld3 marveld3 coding upstream 304017 2178548 ~ 2182385 (-)
hnf4b LOC108271394,LOC108429112 coding upstream 427090 2301621 ~ 2316135 (-)
G174390 NA non-coding downstream 115081 1716837 ~ 1717245 (-)
G174379 NA non-coding downstream 196670 1635392 ~ 1635656 (-)
G174352 NA non-coding downstream 300112 1531816 ~ 1532214 (-)
G174345 NA non-coding downstream 362344 1465494 ~ 1469982 (-)
G174329 NA non-coding downstream 412581 1419369 ~ 1419745 (-)
G174622 NA non-coding upstream 116713 1991244 ~ 1991701 (-)
G174617 NA non-coding upstream 119570 1994101 ~ 1995636 (-)
G174606 NA non-coding upstream 170910 2045441 ~ 2050452 (-)
G174600 NA non-coding upstream 177078 2051609 ~ 2053711 (-)
G174632 NA non-coding upstream 199606 2074137 ~ 2074357 (-)
G174247 fbxo22 other downstream 773092 1057656 ~ 1059234 (-)
fbxl8 fbxl8 other downstream 829294 999059 ~ 1003032 (-)
G174207 LOC108270943,LOC108444425 other downstream 869248 961496 ~ 963078 (-)
calca calca,LOC108271361,LOC107700617,LOC107593372,LOC107688176,LOC107750650,LOC107586036 other downstream 1798160 30281 ~ 34166 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other upstream 140191 2014722 ~ 2022231 (-)
G175098 NA other upstream 727883 2602414 ~ 2603211 (-)
G175048 zfhx3,LOC107679901,LOC107565374,LOC107738341 other upstream 879824 2754355 ~ 2756525 (-)
serf2 NA other upstream 1675334 3549865 ~ 3581987 (-)
G175497 NA other upstream 1694810 3569341 ~ 3572262 (-)

Expression


Co-expression Network