LOC113536785


Basic Information

Item Value
gene id LOC113536785
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3268444 ~ 3269415 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930925.1
ATGTCAAACTCTTCGATTTGTTGTGCTTTTGAGACCCCTATTTTAGATAAATTACTACCCTCTATATTTATCATGGAGTTCATTTTTGGCATTACGGGGAACATTCTGGCCCTCGTTATGTTTGCCTTTGAAGTGGACAGCTGGAAGCCAAACTCCATCTACCTGGCACATCTGGCTGTGGCCGACTCAGTGGTGCTCTTCTTCATGCCATTCAAAGCCTTCTACTACATCAAGGGCCAGGACTGGATCTTCGGAGGCACTTTCTGTAGCATCATGCTCTTCCTCCTGGCAGCCAGCAGGGCCTCCAGCATCTTCTTCCTCACTGCCGTGGCTGTGGACCGCTACCTGAAGATTGTGCACCCACTACATCGAATAAATCGGATGAACCTGAAGTACGCCATGTGGGTCTCTTTAGGCCTATGGGCAATGGGTTTACTTATGACAACTCAGGTGCTGGGCTCGCAAAACAGTTCCAGGGTCGGCAGCCGCATCCAGTGTGGGAGTTTTAGCATATGCTTCAACAGCGATCCACTTTCAAGCTGGCACAACGCCTTCTATGTGATCCAGTTCTGCGTGCCAGGCAGCATCATCATCTTCTGCACAGCCTGCATTACATGGCAGCTGAAAACAAAAACGATGGACACTACAGGCAAGGTCAAGAGGGCCGTCCACTTCATTTTCATCGTTGCCATGGTCTTTTTTGTCTGCTTCTTGCCAAGCACTGCCTCACGGGTCGCTATTACGTTCCTGAGGATCTGGTACAAACAGTGTTCATACTTCAGTGAGGCaaatctgattttttatttttcagtttgctTCACCTATTTCAATAGTGCCCTCAACCCTCTGGTTTACTACTTTTCCACTCCTGCATTCAGTGGGACTGTACAGAAATTTTTCAGGAGATTTACAGggcaaaaagaagagaagatgtCAGGGGAAATGAGTGTGTCTACAGTAACAAGCAGTTAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930925.1 True 972 mRNA 0.47 1 3268444 3269415

Neighbor

gene id symbol gene type direction distance location
pkd1l2b NA coding downstream 15548 3234070 ~ 3252896 (-)
nfat5b LOC108271072 coding downstream 49160 3169323 ~ 3219284 (-)
kars1 kars,LOC102775760 coding downstream 101165 3155541 ~ 3167279 (-)
gcshb LOC108270992 coding downstream 116333 3144782 ~ 3152111 (-)
LOC113536794 NA coding downstream 128283 3140070 ~ 3140161 (-)
LOC113536784 LOC108270651,LOC108276727 coding upstream 7448 3276863 ~ 3277834 (-)
LOC113536796 NA coding upstream 31724 3301139 ~ 3301270 (-)
gli2b LOC108271154 coding upstream 117749 3387164 ~ 3469814 (-)
LOC113536512 inhbb,LOC108270543,LOC108411664,LOC101887111,LOC107713002 coding upstream 285915 3555330 ~ 3561755 (-)
frmd5 frmd5,LOC108441847,LOC107670731,LOC107586052 coding upstream 316962 3586377 ~ 3605995 (-)
G175333 NA non-coding downstream 58040 3210147 ~ 3210404 (-)
G175330 NA non-coding downstream 61473 3206751 ~ 3206971 (-)
G175329 NA non-coding downstream 62978 3205257 ~ 3205466 (-)
G175213 NA non-coding downstream 260782 3007004 ~ 3007662 (-)
G175046 NA non-coding downstream 501839 2760210 ~ 2766605 (-)
G175483 NA non-coding upstream 242576 3511991 ~ 3512232 (-)
LOC113536694 NA non-coding upstream 303243 3572658 ~ 3577973 (-)
G175610 NA non-coding upstream 523122 3792537 ~ 3819530 (-)
G175611 NA non-coding upstream 526264 3795679 ~ 3795925 (-)
G175676 NA non-coding upstream 652898 3922313 ~ 3922941 (-)
G175048 zfhx3,LOC107679901,LOC107565374,LOC107738341 other downstream 511919 2754355 ~ 2756525 (-)
G175098 NA other downstream 665233 2602414 ~ 2603211 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other downstream 1246213 2014722 ~ 2022231 (-)
cd82a cd82 other downstream 1335222 1856883 ~ 1933222 (-)
G174247 fbxo22 other downstream 2209210 1057656 ~ 1059234 (-)
serf2 NA other upstream 280450 3549865 ~ 3581987 (-)
G175497 NA other upstream 299926 3569341 ~ 3572262 (-)
mical2a mical2 other upstream 582432 3851847 ~ 3909893 (-)
bola3 bola3,LOC107686851,LOC107727091 other upstream 723311 3992726 ~ 3996453 (-)
lto1 oraov1 other upstream 1229531 4498946 ~ 4504329 (-)

Expression


Co-expression Network