dhx38 (dhx38,LOC106562086,LOC106587179)


Basic Information

Item Value
gene id dhx38
gene name dhx38,LOC106562086,LOC106587179
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 2976459 ~ 2997108 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308733.1
GCTTTTAGCTTTGTGTTTTCAGATCACTCTGCAGGATCACAGTCTCTCCGCTGAGATGGAGGACGACGCGTCCCTGCACAGGTTAGAGGGCAGCGGCCCGGGCTCGCAGGTCGGAGGACTGATAGTGAAGAAGAAAAACGCTTCGGCGGAGCAGCATGTGTTCCGAGCGCCGGCCCCTCGCACCTCTCTGCTCGGCCTGGATCTACTCGCCGCTCAGAAGCGCAAAGAGCGGGAAGGGAAGGAGCAGCTGAACTCGGACCTCGATGACCGAACAGTGAAAAAATCCAAGGTGTCGTCCTACAGGGACTGGGAGGAGAGCAGAAGCGACTCCGGGTCTGATGAGGACGATGAGGGTGGAGACAGGAGGAACGAGAAGAAGGAGAGCAGGCGTTACCGCACCTCAGGGGCAGAAACGCCCTCAAACCCCGGCGGCGTTAGTGAAGAATTCCGCAGGAAACATcagcagagggagagagaccgCCGAGAGCACGGAGTTTACGCATCGTCTAaagaggacagagacagagacagaaaccgagagagagagagagacagaaaccgagagagagacagagagcggaAAAGTGATCGAGATGACCGGGAGCGCAGCCGGGGGTCCAGCAGCAGCCGCTCGGAGCACTTGGACAGCAGCGTGAGGAGCGAGCGCTCGCAGAGGGATGGCTGGTCTGAGCGCATCAGCCGCGGGAGTCGCAGGGACGAACCTCAAACTCCCCGCAGTCGGCCCAGAGATGCTCCAACACCGTCTGCCTCCAGTTGGGATGAAGATGACAGTGGCTACGCTAGCTCGCGCCGGTCCCACTGGGAGAGCCCCTCTCCGGCCCCCTCACACCGCGAGACTGATCGCTCGGAGCGCAGCTCTCGCTCAGGCCGAGACAGCGAGAGGAGAGACAAGTCAGTGAGAGCTCGTTATCCGGAGGACACGCCTCTGCCCACGCCATCATACAAATACAACGAGTGGGCCAATGACAGGAGGCACCTGGGCTCCACACCTCGTCTGTCCAGAGGGAAAGGTAAAAAGGAGGACGGAGAGGACGGCATCAGTTTTGATAACGAGACTGAGAAGGAGCAGTGGGAGGAAGACCAGAGGCAAGCAGACAGAGACTGGTACATGATGGACGAGGGCTATGACGAATTCCACAACCCTCTGACCTCGAGCTCGGACGAGTATGTGAAGAAGAGAGAGCAGATTTTGCAGAAGCAGACCCAGAAACGCATTTCTGCACAGAAACGGCAGATCAATGAGGACAACGAACGCTGGGAGACGAACCGCATGTTGACCAGTGGTGTGGTGCAGCGCTTGGAAGTGGACGAGGACTTTGAAGAAGACAACGCAGCAAGGGTCCACCTGCTCGTCCACAACCTTGTCCCTCCTTTCCTAGATGGCAGAATTGTCTTCACCAAGCAGCCCGAGCCGGTTATTCCGGTGAAAGATCCCACTTCCGACATGGCCATCATCTCACGCAAAGGCAGCCAGCTGGTGCGCAAAcacagagagcagaaggagCGCAAGAAGGCGCAGCACAAACACTGGGAGCTCGCCGGGACCAAACTGGGAGACATCATGGGCATCAAGAAAGAGGAAGACAGCTCTGACGCTAAGCCTGTCGGAGAGGACGGGACTGTGGACTACAAGACGGAGCAGAAGTTTGCTGAACACATGAAGGAGAAGACTGAAGCCAGCAGCGAGTTTGCTAAGAGAAAGACTCTCCTGGAGCAGAGACAGTATCTTCCCATCTTCGCCGTTCGCCAGCAGCTGCTCAACATCATCAGAGACAACAGTATTGTGATCGTGGTGGGTGAGACGGGCAGCGGGAAGACCACGCAGCTCACACAGTACCTACACGAAGACGGCTACACCAGCTACGGCATGGTGGGATGCACGCAGCCGCGCAGGGTGGCAGCCATGAGCGTGGCCAAGAGAGTGAGCGAGGAGATGAGCAGCAACCTGGGAGAGGAGGTCGGGTATGCCATCCGCTTTGAGGACTGCACATCGGAGAAGACGATAATTAAGTACATGACTGACGGGATCCTGCTGCGAGAGTCTCTGCGTGAGTCTGATCTGGACCACTACAGCGCCGTCATCATGGACGAAGCGCACGAACGCTCGCTCAACACGGACGTGCTGTTCGGCCTGCTCCGAGAGGTGGTTTCCAGACGCTCCGATTTGAAGCTCATTGTCACGTCAGCCACCATGGACTCGGACAAATTTGCAGCATTCTTCGGAAACGTTCCCATCTTCCACATTCCCGGAAGGACGTTCCCTGTGGACATCCTGTTCAGTAAGactccTCAGGAGGATTACGTGGAAGCTGCGGTGAAGCAGGCCTTGCAGATCCACCTCAGCGGCTTGGTGGGAGATATTCTCATCTTTATGCCTGGCCAGGAGGACATCGAGGTGACGTCGGATCAGATTGTGGAGCGgctggaggagctggagaacGCTCCTGCACTGGCAGTCCTGCCCATCTACTCCCAGCTGCCTTCAGACCTGCAGGCCAAGATCTTCCAGAAGGCTCCAGACGGAGTGAGGAAGTGCATCGTGGCCACCAACATCGCAGAGACGTCTCTGACTGTAGACGGCATCATGTTTGTTGTGGATTCTGGATATTGCAAACTCAAGGTGTTCAACCCACGCATAGGTATGGACGCACTGCAGGTTTACCCCATCAGCCAGGCTAACGCTAACCAGCGGGGCCGGGCCGGGAGAACTGGGCCGGGCCAGTGTTACCgGCTGTACACTCAGAGCGCCTTCAAGAACGAGATGTTGACCACCACCATCCCGGAGATCCAGCGCACGAACCTGGCTAACGTGGTGCTGCTGCTGAAGTCTCTGGGCGTGCAGGACCTGCTGCTCTTCCACTTCATGGATCCTCCACCTGAAGACAACATGCTCAACTCCATGTACCAGCTGTGGATCCTCGGCGCTCTGGACAACACGGgtgctCTGACGCCGACAGGTCGCCTCATGGTGGAGTTTCCTTTAGATCCAGCTCTGTCCAAGATGCTGATCGTGTCCTGTGACATGGGCTGCAGCGCCGACATCCTCATCATCGTCTCCATGCTGTCAGTGCCGACCATCTTCTACAGGCCCAAGGGCCGAGAGGAGgagagcgaccaggtgagggaGAAGTTCGCTGTACCTGAGAGTGATCACCTGACCTACCTCAACGTCTACCTGCAGTGGAAGAACAACAACTATTCCAGCATCTGGTGCAACGAGCACTTCATCCACACCAAGGCCATGCGCAAGgtacGGGAGGTGCGAGCTCAGCTCAAGGACATCATGGTGCAGCAGAAGATGAACCTGATCTCCTGTGGCTCGGACTGGGACGTGATCAGGAAGTGCATCTGCGCCGCTTATTTCCACCAGGCGGCTAAGCTGAAGggcATAGGGGAGTACGTGAACGTGCGAACAGGGATGCCGTGTCACCTCCACCCCACCAGCTCTCTCTTCGGCATGGGCTACACCCCCGACTACATCACCTACCACGAGCTGGTCATGACCACCAAGgagtACATGCAGTGTGTGACGGCGGTGGATGGAGAGTGGCTGGCGGAGCTCGGCCCGATGTTCTACAGCATCAAACACGCAGGAAAGAGTCGACAGGAGAATCGGCGGAGAGCGAAGGAGGAGATCTCCAACATGGAGGAGGAGATGTCTCTGGCTGAACAGCAGCTGCGAGCGAGGAGAGAGGAGCAGGAGAAGAGGAACACACTGGGCAGCTCAAGGTCCATAAAGATCTGCACCCCGGGCAGGAGGGAGGACGTGCCCATGACTCCGAAGCGAACTCCTGCACGCTTCGGCCTTTAGATCACCCCGAGCTTCATACCACTCATGTTGTCCTGCTGTTTTCAGATCTGGTGAAGGTgtatttcccagcatgcaccagCAGTAGGAGCACTTGCATAAGAGAAGAGTAAGAGaaaggaggtggtggtggtggtgatggtggaggACTCATGGCTTGTAGTTTTACTGCAGATCTGGTTTTCATGTTACACACATTGCCTTTAATGTGTGAGTCTTTAGGTCCAGTGTATTACTGTCCATTTTTTACACTTATTTGCATACACATAAAATaggtctttatttttattgtgtattttcagTGTCAATATTTGCTTCAcacttatatttaattttttttcctgtttagcTTCATCTCAGTGCTGTATACCAACTCCGAGCTTTGTTTTTCCAGTTCAGTGTGGCAGAAATCCTCAAACTGAATATCATGAGTTTCATGTTATTTATGAGAAATAGCCACACAGTGTTGTAAATACACTgatcataaaacattttaaaacagtacAGTGGTCAGACATGGACGTTTTTATGATATAATGACTAGTTGACTATCATGttgtgttattaaaataaacaccagCCCATTTGGAAGAGACTGAATCTCTGGGAGGCTCCATTGTGACTCTGGGTGCCccagttattttattattgtttttattatttttagcagCTGTAAATATTGGATCTGCAgtaaatgctgaaaaactaTCAAGTCCTGTCAaccataataaatataaagaatttaAATGGT

Function

symbol description
dhx38 Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of spliceosomal complex. Human ortholog(s) of this gene implicated in retinitis pigmentosa 84. Orthologous to human DHX38 (DEAH-box helicase 38).

NR:

description
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like isoform X1

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12815 DHX38, PRP16; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308733.1 True 4580 mRNA 0.54 28 2976459 2997108

Neighbor

gene id symbol gene type direction distance location
hnf4b LOC108271394,LOC108429112 coding downstream 660324 2301621 ~ 2316135 (-)
marveld3 marveld3 coding downstream 794074 2178548 ~ 2182385 (-)
LOC113536684 znf821 coding downstream 904186 2054212 ~ 2072273 (-)
LOC113536364 LOC108271342 coding downstream 965837 1996794 ~ 2010622 (-)
tp53i11a tp53i11,tp53i11a,LOC107687052,LOC108435353,LOC107671372 coding downstream 996780 1936826 ~ 1979679 (-)
LOC113536623 LOC108270986,LOC105889116,LOC107659108 coding upstream 6827 3003935 ~ 3008616 (-)
zgc:162592 LOC108270985 coding upstream 23446 3020554 ~ 3023480 (-)
cpne7 cpne7,LOC107715467,LOC107738346 coding upstream 78870 3075978 ~ 3128645 (-)
rpl13 rpl13 coding upstream 139328 3136436 ~ 3141997 (-)
LOC113536793 NA coding upstream 141719 3138827 ~ 3138907 (-)
G175046 NA non-coding downstream 209854 2760210 ~ 2766605 (-)
G175045 zfhx3,LOC107738341,LOC107659104 non-coding downstream 216633 2756832 ~ 2759826 (-)
G175110 NA non-coding downstream 245586 2729695 ~ 2730873 (-)
G175109 NA non-coding downstream 250706 2725094 ~ 2725753 (-)
G175050 NA non-coding downstream 268576 2613845 ~ 2707883 (-)
G175213 NA non-coding upstream 9896 3007004 ~ 3007662 (-)
G175329 NA non-coding upstream 208149 3205257 ~ 3205466 (-)
G175330 NA non-coding upstream 209643 3206751 ~ 3206971 (-)
G175333 NA non-coding upstream 213039 3210147 ~ 3210404 (-)
G175483 NA non-coding upstream 514883 3511991 ~ 3512232 (-)
G175048 zfhx3,LOC107679901,LOC107565374,LOC107738341 other downstream 219934 2754355 ~ 2756525 (-)
G175098 NA other downstream 373248 2602414 ~ 2603211 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other downstream 954228 2014722 ~ 2022231 (-)
cd82a cd82 other downstream 1043237 1856883 ~ 1933222 (-)
G174247 fbxo22 other downstream 1917225 1057656 ~ 1059234 (-)
serf2 NA other upstream 552757 3549865 ~ 3581987 (-)
G175497 NA other upstream 572233 3569341 ~ 3572262 (-)
mical2a mical2 other upstream 854739 3851847 ~ 3909893 (-)
bola3 bola3,LOC107686851,LOC107727091 other upstream 995618 3992726 ~ 3996453 (-)
lto1 oraov1 other upstream 1501838 4498946 ~ 4504329 (-)

Expression


Co-expression Network