stk33 (stk33,LOC106562365)


Basic Information

Item Value
gene id stk33
gene name stk33,LOC106562365
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 448617 ~ 470183 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308876.1
atggcTGACGGGATTCGCATCCAGACACAAACTAGCGTTCCGAActggaaCAGCAGCCGGTCTAGACCGAACCCGATCTGCTTTGTTTATAAGGATTTTACTTCAGCCTTCAGTTCAGGAGGAGATGGTAATCAACACGGCCTTCATGCAAATTGCAGCTCCTTGGTGAAGATCGATGTTTCTGGAGCTGGTGAGAAGATGGCCACGCAGTGGACCCGTGTGAACAGCGCAGAGAAGAAAGTGCCACACACTCGCCTGAAGGATGAGGCTGACATTCAGCAAATCTACTCCTTCGGGAGGAAACTAGGTCAAGGAAGCTTCGGGGTCGTCTGTGAAGCCACTCACCTGGAGACGCAGAAGAAGTGGGCGATTAAGAAGGTGAACAAAGAGAAGGCTGGGAGTTCAGGTGTGAAGCTGTTGGAGCGAGAGGTGAACATCCTGAAGCAGGTGAACCACAAGCACATCATCCACCTGGAGGAGGTGTTCGAGACGCCTGAGagaATGTACCTGGTTGTAGATCTGTGTGAAGGTGGAGAGCTGAAGAAGCTCTTACAGAAAAACAAGCGTTTCAGTGAGGAGGAGACcagacacatcatcagcagctTAGCCGAGGCCACTGTCTATCTTCACAAACGaGACATCGTTCACAGAGATCTCAAACTGGAAAACATTCTTGTGGATAGTTATCACCATAGCGATGATCACACCATCATAAACATCAAGatcaCAGATTTCGGACTGTCCGTGCAGAAAGGTGGAGTGAGCAGTGGGAACATGCTGCAAACCACATGTGGGACACCCAAATAcatggCACCTGAAGTGATTAACGGCCATGAGTACAGCCAGCAGTGTGACATGTGGAGCATCGGCGTCATCATGTACATGCTGTTAAGTGGAGAACCTCCATTCAAGTCCAGCTCTGAGGAACATCTGTTTGAAATGATTAAGAAAGGAGAGCTGGACTTCTCCGCTCCTGTGTGGGACACCGTCAGTGATGCAGCCAAAACGGTGCTGAGCTGTTTGCTGAAAGTCGACCCAGCACATCGCATCACAGCCAGTGAGCTGCTGCATAACCCCTGGGTCACGGGAGACACGTCCACGAATGCCTCCCCCACCAACGTGCTGGTGATGATGCGACAGTTCCGGAACGCTCCAGAGGATGACGAGAGCGAGGAGGTGAGCGAGGGGATGGGAAGCCTCTCTCTCAGCTGCTCTCAGGACAGCGTGGTCGAGTCTGTGGCCTCCCCAGAACCTCCATCTGCTCCTCCCTCTGCTCCTGGATGTGCTCAAGCGCAGACACTCAGCCTCAACGGAGACCTGAACAGCAGCAGCAAGAAACCTTCCACGTCCACAAAACAGaaaaagaagaaatcctACTCTTACGACGGTACGAAGAAGAACGGCTCTGCTGTGAAGACGAGCAGCACGCTGAGTTTGAGCACGGTGCAGTCCTACACGGGTAACAAACAGACGAGCACAAAGCGCCACAGCCAACCGGACAAGCAAGAGAGCATCAGTAAGGCCTCCTCTCCCAAACCATTCACACCAAATGATAGCCACGCCCCCTCCTCCACAGGCCACTCCCACAACTCAGCTCCAGGGCCAAGAAGATCAGTTAGTTCACACACACCTTAGAGTCCGGTGGAGGAAATGCCGAACCCGGGGTTCACTGGGCAGATCTACTGGACTCATGAGACAGAAAAAGTCTCAAGCGCCGTTCGTCTGACTTCATGATCCGTTTCTCCTGGATGGTCTTCAGAGAACTTGTACAGGATAAACTATTTTAGACTTAAACTTGAAAAGCtggataaaaatgaaaaaaaaatcaacccaCTGCTGTTTCAAGTGTATGGGTTTAAGATTATTTAATGATTGCGTAAGACCTGGGTGAGCATTTGCCTCGAGTCTCGTCTGCCTTACACTTCCtgggaaatattttttattttaatttttgctcCAATATGAAAACAAATACTTATATTTCTAAACAGGGTTTCAGGGTTTGATAGCTGTagtagttcttttttttttaactatagaTCCAATGCCACATAACCAAAGATACCTGGAGCCACTTTAAACTGTAATCGTATTCACGCCTCACATAAACAAACACCACAACAAAGCAACTGTTAATTCTATAAATActaatttaaatagttttaaaaacttGCCAAATCACTACTGTGTATAGATAATGATTTTacttcatcaataaacacacataGTTCATGTTGTAGTTGAGAAAaacctttattttcattttaccaATAAACTTCAATCATTCATTCTGCTTCAGTAA

Function

symbol description
stk33 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in mitotic DNA damage checkpoint signaling. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human STK33 (serine/threonine kinase 33).

NR:

description
PREDICTED: serine/threonine-protein kinase 33-like isoform X1

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K08813 STK33; serine/threonine kinase 33

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308876.1 True 2302 mRNA 0.47 15 448617 470183

Neighbor

gene id symbol gene type direction distance location
lmo1 lmo1,rbtn1,LOC107085592,LOC107593328 coding downstream 112809 299224 ~ 335808 (-)
ric3a NA coding downstream 176045 267730 ~ 272572 (-)
pde3b pde3b coding downstream 352487 45726 ~ 96130 (-)
rerglb rerglb,LOC108271353,LOC108429104,LOC107674441,LOC107593310,LOC107586038 coding upstream 3648 473831 ~ 480942 (-)
trim66 trim66,LOC107750616 coding upstream 16462 486645 ~ 511403 (-)
dennd2b st5 coding upstream 43973 514156 ~ 584811 (-)
tmem9b tmem9b,LOC107700603,LOC107585953,LOC107754675,LOC107750540,LOC107674442 coding upstream 122620 592803 ~ 602182 (-)
scube2 scube2 coding upstream 135586 605769 ~ 639000 (-)
G173639 NA non-coding downstream 182079 263184 ~ 266538 (-)
G173586 NA non-coding downstream 233156 155542 ~ 215461 (-)
G173603 NA non-coding downstream 261455 185451 ~ 187162 (-)
G173602 NA non-coding downstream 262803 184027 ~ 185814 (-)
G173581 NA non-coding downstream 309481 138193 ~ 139136 (-)
G174054 NA non-coding upstream 36599 506782 ~ 519973 (-)
G174074 NA non-coding upstream 98230 568413 ~ 569242 (-)
G174127 NA non-coding upstream 326211 796394 ~ 798832 (-)
G174147 NA non-coding upstream 353456 823639 ~ 823896 (-)
G174150 NA non-coding upstream 359753 829936 ~ 830269 (-)
calca calca,LOC108271361,LOC107700617,LOC107593372,LOC107688176,LOC107750650,LOC107586036 other downstream 414451 30281 ~ 34166 (-)
G174207 LOC108270943,LOC108444425 other upstream 491313 961496 ~ 963078 (-)
fbxl8 fbxl8 other upstream 528876 999059 ~ 1003032 (-)
G174247 fbxo22 other upstream 587473 1057656 ~ 1059234 (-)
cd82a cd82 other upstream 1386700 1856883 ~ 1933222 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other upstream 1544539 2014722 ~ 2022231 (-)

Expression


Co-expression Network