pkd1l2b


Basic Information

Item Value
gene id pkd1l2b
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3234070 ~ 3252896 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308885.1
ATGGAGAGACATCGTCTGTCTGCTTTGCTACTTGTGTTGGTCCTCAGTGTCAGCACAGTCTGTGGTAAAGAGTACACAGAGACTGTGTCTTGCCCAGAGAACCAAAAAGCCTATAATGGCTCTTGTTATGAGTTTGTGGCTCTGCAGCGCAGCTTCGTTAATGCTCAGGCCGGGTGTGAGCACAGCGGTGGACATCTGGCCTTCATCCACAATGAAGAAACACAGCAGTTTCTCCAGAAACATCTGCAGCCGGAGCACAACTGGTGGCTCGGGTTAGCGTCTGCATCCTTCAGCCTGAGCTCGACCTCTTCTAAGGATCCGTTGTCCTGGCTGGATGGATCTGAAGTGAGTTACTCTAACTGGCTCAGGGAGGACGATCCTGGCTCTGGCTGTGGCTACATCTCCAAAGAATCAGATTTTCAATGGGACACAACTAATAACTGCAGCCAGGAGTTCTTCTTTATCTGCGAGTTTGAGTCGGGACAGAGTCTAGCCTGTGTGGACAATCACGCCGTGCTGAAGTGTGACTCTGGTCAGGTCATAGAGATCGATGAGAGCTTCTACGGCAGGAACACAGTGCACTACTGCAGAGCCAACCATTCTCTCTCGCACACATCTGGACAGGACAGGTGCAGCTGGGTGGATGTGGTGAGTGTGGTATCAGACATCTGCAATGGCCAGCAAGTTTGTGAGGTCCCTGCAGATACGCCAGCCTTTGGAGAGCCTTGTCCACAACTGGGGAGTTACCTGTCTCTAAAATATCACTGCAAAGATGAACCCCATTTATCACCGAGAAATGGAGCCAAAAGCTCTTCACAGTTTAAAAGGTCTTGGGATTTTTTATCAAATTATTGCTCATGCCAAGATCTACATGACAGCGGAAAATCTGATGTTAAAATCAAgTGTTTGACAAACTGTGACACAGTAGATATCACTATGGATATTTCTGTACAATCAGACCCTAAGGATTTGACAGGTGTTGAGTGGTATTACGTACAGCCGTATGGTCCAgttgttGTGTCTCCATGCAAGAAAGACAATACCGGTAGGATAACTCTGAGTCAAAAGCTTGGAGATGGTGCCTTTTATAATGTTTCAAGTATATTATTGAGAACCCTAAGGTATAGCATCACCATTGTAGTAAAAGGTTATAAAGATGAAGATCTTGGTTATGGTTGCTACACTGCTCGACTCTCAGCAACCACCACAACAGCCAGAACCACATCCCAAAGTCCAACCAGGAATCCATCATTTACCACAAACCAAAGTCCAACCACAACCAGCTCCAGGTATACAGCCTCCACCACCACAGTACTAACATGTACAACAGAGCTACCCACGCCCAACTGTGAAATTTCCCCTCCCGATGGGGATATCTTCACTCCCTTCAAAGTCAACTGCACCATAGACCAGAATTTTTGCTGTTCTGGGCTTTGCTCATTCTACCTGAAAACTTCTAATGGTGATTATGTGTATCATGGCAACCAGGAGACCATGCCAAACCTGTTTCTTCCTTGGAGTACAAATGAGCTGATAGTCATCATTAAGAATAATGCTAATCAGACAATCAGCACTACACTTAACGTCCATATCAACGAACACACCAATGACTCTGCAGGGTTTCTACAGGATGTTGTGTCACAAGCTGCGTCTCTGCAGAAAGCAGGGGCGCTTTCAACTCCCATGTTGGCGCAGTTATTTGAGAGCATTTCCGCTAAGATGAACAACAATTCGGGAGATGAGCAAAAAGCGCTGGTGGAGAACATGTCTAAATCTTTGTGTGATGCGGTGGCCCAGGGAAATACCACCAATCTTCATGATGAGATAAAGCTCATTTCTTCCTCTATCCTAAGCCTTGTAGCACATGAAGATCAGCTGACATCTAATGCTAAGaCAGCAGCATGCTGTGTTCTTGAAAACATTAGCAAGCAACAAATCTCTTTGTTCGATGGGAATGGAAATAGTACAGCAGCCAGTGCTGCTTTGCCTATTGTTTCTTCAGCCAGTGTTCTCCTCAAACTATCTGGTAACAATGACCAAAAGATCTCTGAAACATTACTCAAGACAATGAATCAAGTACAGAGCGCCATGCTCGCAAATAAACCGATAAACACAGAGCCAATATTATTAAATTCTCCATTCATTAATCTGTATGTGAACAGGCTGTCCCCAGCTAATCTCTCTGAGTCCCAGATCAGCAGTGGGAACACTTCAGCTGCCTTCTCACTTCCGTCATCGGTTTCTCGTCTGGTTCCTTCAGATGAGCCAGTGAATTTACGTATGATGAGCTTTGGGACAAACCCTTTTGCTTGGAACAAAGACGAGGATGTTAGTGGAACAGTTGGGAGTCTTTCTCTTACCAGGGATGATGGCACTACTATCCCAGTGAAAAATCTGGATGAGGAAATCGAGATTCTTTTACCAAGACTAGGTGCTGCGGcttcaaacaaaacatttctgaacCTGACAAGTTACAGCACTATGGCCATCAATGTGACTGCTCCAAACAACTCTCTGGTGGTGAAACTGGAACCTTCAGCTGAGACACCTTTGATGTTACATCTGGGCTTTCAGTACTATCCAAACGACACCAAATATGTGGCCAAGATCCAATTACCTCAACCAAATGGCTCACAAGAGGTCAAGTATACATGGGTGCTGAACCCAAAGGATGTGCCACTAGAAATGGGAGTTTACTATCTTCTAGTGAGGCCTATTGTATCAGCAGGTGTGAAATCCTCAAATGTGACAGTGTTCATCACATCGATTGCCTCTAACTGCAAGTACTGGAATGAGACGGACAGCAGCTGGCATGAGCAAGGCTGTAGGGTTGGCCCTCGCACCACATCACTGGTCACGCAGTGCCTGTGCACTCACCTGACAGCTTTTGGGAGCTCGTTCTTTGTCATGCCTAACACGGTCGACGTGTCTCGCACTGCTGAACTGTTTTCCACGTTTGTCAACAACCCCGTGGTAGTGTGCTTTGTTGGCGCCATATTCCTGGCCTACATTATAACAGTGATATGGGCACACAAGAAAGACCTTCAGGACAAAATAAAGGTGAGAATCACAGTGTTGGAGGATAATGACCCATTGGCTGAATATCGTTACTTAGTGGCTGTCAGCACGGGGCATCGCCATGGAGCTGCCACCACGTCTCACGTTACGCTGACGCTAATAGGCACTATTTGGGAGAGTAAGCCTCATCATCTGACTGatccagaaaaaaatgtgtttactaGGGGAGGGGTGGACATATTTATGCTCACCACTCCTTTCTCACTTGGAGATCTGCAGAGCATCAGGCTGTGGCATGACAACTCTGGCGAGCATCCTGATTGGTATGTCAATAAGGTGATGGTGCAGGATCTGGAGACTGGACAGGTGTGGCAATTCTTGTGCAACTCATGGCTGGCCATAGATATAGGGGACTGCACTCTGGACAAAGTGTTCCCTATAGCATCTGAGAAGGACTTAAAAGGTTTTCACCATATCTTTTTCACGAAGACAGCAAAAGACTTGTGTGACGGCCACATCTGGTACTCTGTCGTAAATCGACCTGCCAACAGTAATTTCACTCGAGTGCAGCGCCTCTCTTGCTGTTTCTCCCTGCTGCTCTGCACCATGCTAACCAGCATCATGTTCTGGGGAGTTCCCACAAACCCCTCTGAGCAAGACATGGAATTAGGCAGTATCAAGTTCAACTTGCAACAAGTGATGATCGGCTTCCAGAGTTCCATTATTATGTTTCCTGTCAACCTCTTGATTGTGACCATATTCAGAAGCACCCGGCCtcgaaaaaagaaagaagtagcAATAATTCAGGAGTCCGAGCCTGGATCTCCTaagcaggggaaaaaacatgcagagaGATGGCGCATTCAGACAAGCATTACTATCGAGATTGTTGTCAAAGACATAAAGAAAATAGTTCGTGCCCTGGCTAAAGCAGTGAGGTGTCCTGTTCCAAACGCAGCACAGGAATCTGAAATGACAGACGTCAACACTTTACTGTTTGTACTGGAAGACATCATTCGGCAGCAGAATTTCACTCTCAGCAAATTTTATGTAGAAGATACCGAAAACGATCACTTCTTAGTATATAAGCTCTATCGCCCCTATCTCTACAAACAGCTCCGGAATTTGGAAAAAGAGCTGAGGCTGCTGGGTCCTTCGCAATTCCCTAAACCAGAGGGCTACATTCAGTCTGTGCTTCAGGTTCAAAATATGAAACAGTTGCTAGAACCGTATCTCTACTCCAACCCCAAGGGCAACGAGGTCCACATCGCCGGTcctgaagaagagaaaaagaaaaagtgttttcAGAAAGGCTTACCCTGGTGGTTTGTGATCGTGGGTTGGATTCTCGTCATGGCCACTAGTGGTGTGTCGGCATACTTCACCATGATGTATGGGCTGACGTACGGAAAAGAGCGCTCCATTAGCTGGCTCATTTCTATCTCAGTGTCGTTCTTTGAGAGTTTGTTCGTCACCCAGCCTATAAAAGTACTTGGATTTGCGATCTTCTTTGCTCTAGTGGTGAAAAATATTCAAAGTGAGGATGAGAATTATTTTCTACTGTTGAAGGACATGACATTTACCTACTCAGAGGATCCTGATGATGTACGCATTTCCAGAAGGGACAGCACATGCGGGTTCTACCAGCCCCCTCCTCCTGCTGACATtgagaaaatgaaggaaaactATATCAAAAATAAGAAAGCTATTGCATTAATCAAGGAGATTATCATTTATGTGGCGTTTCTGTGCGTACTACTCGTGGCTACGTATGGTCAGCGTGATCCAAATGCTTATTATCTCACTCAACACATTCAGCAACGTTTCAGCAATGGCATCACTGACAGCATGAGCCCCGGAGATGTGTTTACCTGGGCAAATGACGTCCTCATCAGCAACCTCTATGGACAACGTCCAGGCTTCATCACCGATGGAAACTCAAAGCTTGTGGGAAGTGCTCGTCTCCGGCAGATTCGGGTGCTCAAGGACTCGTGCAGAATTTCTAAAGCCATGCAAAGTGATGCTCTTGATTGTCATGCGCCATATTCTTGGGGTATAGAGGACATGGGCTCCTATGGTCCAGGCTGGAACCGTTCAAGAGATGTAAATATGACTAAGAGCCTCCTCACACCCTGGCAATACCAAACCCAGTCCAAACTCAGAGGGCACCCTATCTGGGGCACCATGGCTTTCTACAGAGGTGGAGGATTTGTACTGGACCTGGGTCTTGACCCACAAGAAGCAAGCAGCATGCTGCAGTACCTATTTGACAACACGTGGCTGGATGTGTACACCCGGGCGATCTTCGTTGAGTTCACGGTATACAACGCAAACGTCAATCTCTTCTGTATTGTGACCTTTATGCTAGAAACCACCGCCTTGGGAGCGTTCCAGTACAGCAGCGAGCTGCATAATTTACGTCTTTATCAGACCACGGATGGCATTAATATAGTGGCCTCTGaggtcatttattttcttttcattctctaTTATATGTTTGTGCAGATCAAGAGGATCAAGCAGCAGAAATTACAGTACTTCAGGAGCAAGTATAACCTTTTAGAACTGGCCATCATTCTTTTAAGTTTGGTTGCAGTGGGCGCAATCATCAATAGGACAATTCTGGGAAACCAAGATCTGAAGTATTTTCAGGAGCACAAAGACCATTTCCCGAGCTTCTACGACACGGCCTCTGCAGACGCAAGCCTGGGGTACATTTTGGCTTTCCTGATTCTGCTCTCCACCATCAAAATGTGGCACCTGATGCGCCTCAACTCCAAACTGAACCTGATCACGCGCACGCTGCAGCGAGCGTGGAACGACATCTCCAGCTTCATCGTGGTCCTAATCATCATGGTCCTAGCCTACTCCATTGTGAGCAATTTGCTGTTTGGTTGGATTCTGTACACATACAAGACTCTTCAAGATTCCATGTTGGCGATTATCGCCTTACAGCTTGGCATTTTCAATTATGAACAGGTCCTGGATTTGAACCCAGTGCTCGGTGCGTTCTTAATTCTCTCTTGCGTCATCTTCATGACATTCGTGGTGCTGAACCTTTTCATCTCGGTCATCCTTGAGGCGTTCAGTCACGAGCAAAAGCACTACAAGCCATCTGAAGAGGAGGAAATAGTAGAACTGATGATGCTAAAGATCTGCAAGACGTTTGGAATCCCAGTTAGGAAGAAATGATGAAGAAAACCAAACATGACCCTCTTCCTT

Function

NR:

description
PREDICTED: polycystic kidney disease protein 1-like 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308885.1 True 6240 mRNA 0.46 36 3234070 3252896

Neighbor

gene id symbol gene type direction distance location
nfat5b LOC108271072 coding downstream 14786 3169323 ~ 3219284 (-)
kars1 kars,LOC102775760 coding downstream 66791 3155541 ~ 3167279 (-)
gcshb LOC108270992 coding downstream 81959 3144782 ~ 3152111 (-)
rpl13 rpl13 coding downstream 92073 3136436 ~ 3141997 (-)
LOC113536785 NA coding upstream 15548 3268444 ~ 3269415 (-)
LOC113536784 LOC108270651,LOC108276727 coding upstream 23967 3276863 ~ 3277834 (-)
LOC113536796 NA coding upstream 48243 3301139 ~ 3301270 (-)
gli2b LOC108271154 coding upstream 134268 3387164 ~ 3469814 (-)
LOC113536512 inhbb,LOC108270543,LOC108411664,LOC101887111,LOC107713002 coding upstream 302434 3555330 ~ 3561755 (-)
G175333 NA non-coding downstream 23666 3210147 ~ 3210404 (-)
G175330 NA non-coding downstream 27099 3206751 ~ 3206971 (-)
G175329 NA non-coding downstream 28604 3205257 ~ 3205466 (-)
G175213 NA non-coding downstream 226408 3007004 ~ 3007662 (-)
G175046 NA non-coding downstream 467465 2760210 ~ 2766605 (-)
G175483 NA non-coding upstream 259095 3511991 ~ 3512232 (-)
LOC113536694 NA non-coding upstream 319762 3572658 ~ 3577973 (-)
G175610 NA non-coding upstream 539641 3792537 ~ 3819530 (-)
G175611 NA non-coding upstream 542783 3795679 ~ 3795925 (-)
G175676 NA non-coding upstream 669417 3922313 ~ 3922941 (-)
G175048 zfhx3,LOC107679901,LOC107565374,LOC107738341 other downstream 477545 2754355 ~ 2756525 (-)
G175098 NA other downstream 630859 2602414 ~ 2603211 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other downstream 1211839 2014722 ~ 2022231 (-)
cd82a cd82 other downstream 1300848 1856883 ~ 1933222 (-)
G174247 fbxo22 other downstream 2174836 1057656 ~ 1059234 (-)
serf2 NA other upstream 296969 3549865 ~ 3581987 (-)
G175497 NA other upstream 316445 3569341 ~ 3572262 (-)
mical2a mical2 other upstream 598951 3851847 ~ 3909893 (-)
bola3 bola3,LOC107686851,LOC107727091 other upstream 739830 3992726 ~ 3996453 (-)
lto1 oraov1 other upstream 1246050 4498946 ~ 4504329 (-)

Expression


Co-expression Network