LOC113536694


Basic Information

Item Value
gene id LOC113536694
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3572658 ~ 3577973 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403695.2
tacaacgcatgtctttggattggGGAAAGAAACtcccgaagcatggggagaacacacAACCTCTGTGCAcccagggtggaggtgggaatcAAGCCCCCAGCCCTGAGGTGCAAGGCATCAGTGCTAACCCCTAAACCACCCTGTCCCCAAGTCCTGGACAAAATAACACAAGTACATTAATAACCATATATATTTCTATTGCTCCATagatttcaccaaaaaaaagatgaagacaatggacaagaaaaagaaaagaaatacccTGCTGTTCATATGCCCCATCTTGAGGAAGAACCTCGTGCTCATCCATGCaggccagacacacacatacacacacacacacacacacaccctcctatAACATATATATGAGTCAGGTTCTTAGTCTGTAGCCTTACAAATCAAGCGTTTGACTCCAGGGGATGGAGTCAAACCgaacatgttattattattattattattattattattattattattattatgcaggCTGTTTCAGCAGTAATGGTTGGAAAAATATCATCAGGTGGTcaaaaatgtgtatgtgcagtAATCCATACCCATCTGTTGCAGCAGTAAGGTGCAGATGGAGGACCtgattcattttattcagtGGAAATCCCAGGAGTGTCTCCAGCATGTTGATGAACCTGACCAGAAGGAGGACTATTTCTTCTGGAGGATTATGGAGCTGCTCTGCAAATAAAATGAACTCTGAAGGACTGACCTGTGCAGCACATATATGCTACGTGAATGCAAACATGTCAGGGATCTCGCTTTGATCTCATTGGGTGTGACAgATCTACAAGTCCTGTCAGCAAGCTAGCTGAGTCTGGCCTTTTTGATCAAGCCTTTGATTATTGCAAGACCATCTCTAGTGCAATTGCCACTTGCCCTCGCGAAATCACAGAGACCACGATAGAACTGACTATTGCGCTTTTGTAGTTTGAGAGACTACACCAAGGGAAGAATCTTCATCAGCTGCACACAGACAAAGTGTTTGAGCTGAAGGACTCAGAATGTGGCCTTATGACTAGTGAGATGTTCGCTCTCCAGCTTCCACATCTGGAATGCCACACTACACCATGGGgTTGCCACAGTCTGATATGTTGGTGTCTGGGCCAGGACCCTGAATCTCGGCCAAGCTTCGAAGAAATCCTCAGCCATGAAAGGTTTAAAAGTCTTCAGAACTAAGTCCAGgaACCACCGAATGCACCTCACTCCTGTGATGCACAAGACAGATGTGAAACAGATGTGAAGACAGCAGTACTTCTAATAGGACCACAGatagctagaagtTGACATGGATGGACCCACATGGATATCCTAAACATTGCTCTTACCATATAAATCTACAGAATCGGTGACTTCATTTCTTcaattgatacaaacagttttccTACGATGGCTCAGGACAACAATTCCCACAGTTTTCACAATTCCCCCCCAACAGTTTTGccctcaagtctccatcagtgaacagttgaaaAATAGACTCCATGTTAAAACTATAGTGAACtacctggttacacaactgcactttttgaccatatagtatactgttatagaagggaattatttataatcacactatctgctgtgacccagatgaggatgggttcccttctgagtctggttctgGGCTACCACGGGCCATGTCGATCGGGTGTCCGCACTAAGATTGGTGTCAATATGGTGTTCCTAAGGGAGCTCTGGACTACCAGGTCACCTAAGGAGGGATGAACCGACCCAGGTTGGGAATGAAGCAGGTCAAAGCCCCTGTACCAATCAGTAGTGGGATAGTGCCTGTGAATTGATGTGGTAGTGCAGCCTGGGTGATACAGTGAGTCTcttacataaacatttcatgATCACAATTTTTGCTAGAACAATGCCATATAAGCATATCAAATGCTACATAATGTGAATATACGCATCACTTCTAAGAGCAGACattttcacgttttttttttcttcacaataATATATATGGAACACATG

Function

GO:

id name namespace
GO:0038023 signaling receptor activity molecular_function
GO:0060089 molecular transducer activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403695.2 True 2001 lncRNA 0.43 7 3572658 3577973

Neighbor

gene id symbol gene type direction distance location
LOC113536512 inhbb,LOC108270543,LOC108411664,LOC101887111,LOC107713002 coding downstream 10903 3555330 ~ 3561755 (-)
gli2b LOC108271154 coding downstream 102844 3387164 ~ 3469814 (-)
LOC113536796 NA coding downstream 271388 3301139 ~ 3301270 (-)
LOC113536784 LOC108270651,LOC108276727 coding downstream 294824 3276863 ~ 3277834 (-)
LOC113536785 NA coding downstream 303243 3268444 ~ 3269415 (-)
frmd5 frmd5,LOC108441847,LOC107670731,LOC107586052 coding upstream 8404 3586377 ~ 3605995 (-)
tmed3 LOC108271219,LOC108441851 coding upstream 28172 3606145 ~ 3610869 (-)
znf710b znf710b,LOC108270981,LOC108444484,LOC107593042,LOC107700425,LOC107741417,LOC107585980,LOC107670757 coding upstream 47450 3625423 ~ 3640960 (-)
arntl1b arntl,arntl1a,LOC108270977,LOC105895625,LOC108439331 coding upstream 81411 3659384 ~ 3679257 (-)
rassf10b LOC108270549 coding upstream 157773 3735746 ~ 3737554 (-)
G175483 NA non-coding downstream 60426 3511991 ~ 3512232 (-)
G175333 NA non-coding downstream 362254 3210147 ~ 3210404 (-)
G175330 NA non-coding downstream 365687 3206751 ~ 3206971 (-)
G175329 NA non-coding downstream 367192 3205257 ~ 3205466 (-)
G175213 NA non-coding downstream 564996 3007004 ~ 3007662 (-)
G175610 NA non-coding upstream 214564 3792537 ~ 3819530 (-)
G175611 NA non-coding upstream 217706 3795679 ~ 3795925 (-)
G175676 NA non-coding upstream 344340 3922313 ~ 3922941 (-)
G175767 NA non-coding upstream 498171 4076144 ~ 4137879 (-)
G175775 NA non-coding upstream 505999 4083972 ~ 4086193 (-)
G175497 NA other downstream 396 3569341 ~ 3572262 (-)
G175048 zfhx3,LOC107679901,LOC107565374,LOC107738341 other downstream 816133 2754355 ~ 2756525 (-)
G175098 NA other downstream 969447 2602414 ~ 2603211 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other downstream 1550427 2014722 ~ 2022231 (-)
cd82a cd82 other downstream 1639436 1856883 ~ 1933222 (-)
mical2a mical2 other upstream 273874 3851847 ~ 3909893 (-)
bola3 bola3,LOC107686851,LOC107727091 other upstream 414753 3992726 ~ 3996453 (-)
lto1 oraov1 other upstream 920973 4498946 ~ 4504329 (-)
G176307 NA other upstream 1501844 5079817 ~ 5080895 (-)
trip4 trip4 other upstream 1561637 5139610 ~ 5196818 (-)

Expression


Co-expression Network