Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC113536799 |
| gene name | NA |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 4095207 ~ 4095262 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_003403709.1 | True | 56 | ncRNA | 0.41 | 1 | 4095207 | 4095262 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| ipo7 | ipo7,LOC106587545,LOC106562356 | coding | downstream | 34364 | 4040364 ~ 4060843 (-) |
| LOC113536791 | NA | coding | downstream | 42440 | 4052589 ~ 4052767 (-) |
| LOC113536792 | NA | coding | downstream | 46164 | 4048865 ~ 4049043 (-) |
| bco1l | LOC108271004 | coding | downstream | 77275 | 4007408 ~ 4017932 (-) |
| bco1 | LOC108271003 | coding | downstream | 90131 | 3997063 ~ 4005076 (-) |
| LOC113536789 | NA | coding | upstream | 1452 | 4096714 ~ 4096770 (-) |
| LOC113536797 | NA | coding | upstream | 4533 | 4099795 ~ 4099851 (-) |
| LOC113536798 | NA | coding | upstream | 5109 | 4100371 ~ 4100426 (-) |
| adgrg3 | NA | coding | upstream | 50590 | 4145852 ~ 4159196 (-) |
| LOC113536655 | NA | coding | upstream | 77509 | 4172771 ~ 4181748 (-) |
| G175775 | NA | non-coding | downstream | 9014 | 4083972 ~ 4086193 (-) |
| G175676 | NA | non-coding | downstream | 172266 | 3922313 ~ 3922941 (-) |
| G175610 | NA | non-coding | downstream | 275677 | 3792537 ~ 3819530 (-) |
| G175611 | NA | non-coding | downstream | 299282 | 3795679 ~ 3795925 (-) |
| LOC113536694 | NA | non-coding | downstream | 517234 | 3572658 ~ 3577973 (-) |
| G175854 | NA | non-coding | upstream | 203715 | 4298977 ~ 4299868 (-) |
| G175963 | NA | non-coding | upstream | 526866 | 4622128 ~ 4622987 (-) |
| G175967 | NA | non-coding | upstream | 535086 | 4630348 ~ 4632785 (-) |
| G176015 | NA | non-coding | upstream | 637120 | 4732382 ~ 4736416 (-) |
| G176028 | NA | non-coding | upstream | 744726 | 4839988 ~ 4840693 (-) |
| bola3 | bola3,LOC107686851,LOC107727091 | other | downstream | 98754 | 3992726 ~ 3996453 (-) |
| mical2a | mical2 | other | downstream | 185314 | 3851847 ~ 3909893 (-) |
| serf2 | NA | other | downstream | 513220 | 3549865 ~ 3581987 (-) |
| G175497 | NA | other | downstream | 522945 | 3569341 ~ 3572262 (-) |
| G175048 | zfhx3,LOC107679901,LOC107565374,LOC107738341 | other | downstream | 1338682 | 2754355 ~ 2756525 (-) |
| lto1 | oraov1 | other | upstream | 403684 | 4498946 ~ 4504329 (-) |
| G176307 | NA | other | upstream | 984555 | 5079817 ~ 5080895 (-) |
| trip4 | trip4 | other | upstream | 1044348 | 5139610 ~ 5196818 (-) |
| LOC113536561 | srsf7,LOC107665899,LOC107693014 | other | upstream | 1601118 | 5696380 ~ 5708304 (-) |
| LOC113536608 | LOC108270551 | other | upstream | 2761493 | 6856755 ~ 6861348 (-) |
