rps26 (rps26,LOC103039794,LOC108433306,LOC100304575)


Basic Information

Item Value
gene id rps26
gene name rps26,LOC103039794,LOC108433306,LOC100304575
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 6304844 ~ 6307873 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU296070
GTTCTCTCGCGTGCCACTTAAGCCaagatgACCAAGAAAAGGAGGAACAACGGCCGTGCCAAGAAGGGCCGTGGCCACGTTCAGCCCATCCGCTGCACCAACTGTGCCCGCTGTGTGCCCAAAGACAAGGCCATCAAGAAGTTTGTCATCAGGAACATTGTTGAGGCAGCAGCTGTGAGGGACATCTCTGAGGCCAGTGTGTTTGATGCTTATGTGTTGCCAAAGCTGTATGTTAAGCTTCATTACTGCGTGAGCTGCGCCATCCACAGCAAAGTGGTGAGGAACCGTTCACGCGAGGCCAGGAAGGACCGCACGCCACCTCCTCGCTTCAGACCTGCTgGTGCTGCTCCAAGAGTTCCTGCTAAGCCCATGTGAATTGGAGCATTTTGCTGATGTTTGtacgtaaataaataataccCCCTTAAGACCATGtggattgtttgttttttttttggttgaaggAAATTTTTGGTTTGCTGTCTGG
>XM_026920329.2
TTAGCCAGGCGGACGCGAGAGATATCAAAGGGTCCTTGGCATGCAGAATGTGCAAGGGATGCAAGACAAGGCATCACACGGGCTTTATAAGCTACGTAATACCGCTTCCGGTTCTCTCGCGTGCCACTTAAGCCaagatgACCAAGAAAAGGAGGAACAACGGCCGTGCCAAGAAGGGCCGTGGCCACGTTCAGCCCATCCGCTGCACCAACTGTGCCCGCTGTGTGCCCAAAGACAAGGCCATCAAGAAGTTTGTCATCAGGAACATTGTTGAGGCAGCAGCTGTGAGGGACATCTCTGAGGCCAGTGTGTTTGATGCTTATGTGTTGCCAAAGCTGTATGTTAAGCTTCATTACTGCGTGAGCTGCGCCATCCACAGCAAAGTGGTGAGGAACCGTTCACGCGAGGCCAGGAAGGACCGCACGCCACCTCCTCGCTTCAGACCTGCTgGTGCTGCTCCAAGAGTTCCTGCTAAGCCCATGTGAATTGGAGCATTTTGCTGATGTTTGtacgtaaataaataataccCCCTTAAGACCA

Function

symbol description
rps26 Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 10. Orthologous to human RPS26 (ribosomal protein S26).

NR:

description
40S ribosomal protein S26-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02976 RP-S26e, RPS26; small subunit ribosomal protein S26e

RNA

RNA id representative length rna type GC content exon number start site end site
TU296070 False 484 TUCP 0.51 4 6304844 6307763
XM_026920329.2 True 540 mRNA 0.53 4 6304898 6307873

Neighbor

gene id symbol gene type direction distance location
lmbr1l lmbr1l coding downstream 18286 6268009 ~ 6286558 (-)
dhh dhh coding downstream 44654 6253959 ~ 6260190 (-)
arhgef25a arhgef25,LOC108433408 coding downstream 134948 6096177 ~ 6169896 (-)
slc26a10 slc26a10,LOC108275531,LOC108433420,LOC103043095,LOC106567041,LOC105013543 coding downstream 242926 6051318 ~ 6061918 (-)
birc5b birc5b,LOC108275580,LOC108432442,LOC107571769,LOC107681933 coding downstream 451970 5850280 ~ 5852874 (-)
wnt1 wnt1 coding upstream 11644 6319517 ~ 6325756 (-)
mipa mip,LOC103037977 coding upstream 410314 6718187 ~ 6723249 (-)
ptges3a ptges3,ptges3a,LOC107745455,LOC107570321,LOC108433158,LOC107716195,LOC107695820,LOC107571786 coding upstream 424884 6732757 ~ 6738329 (-)
rnd1b rnd1,rnd1b,LOC108275505,LOC103037018,LOC104932892,LOC103358261 coding upstream 467782 6775655 ~ 6788523 (-)
cacnb3b cacnb3b,LOC108275626,LOC107695823,LOC107570227,LOC107668566,LOC104967530 coding upstream 495464 6803337 ~ 6820579 (-)
G250174 ikzf4 non-coding downstream 8275 6296271 ~ 6296569 (-)
G250173 NA non-coding downstream 8931 6295705 ~ 6295913 (-)
LOC117599210 NA non-coding downstream 10190 6293377 ~ 6294654 (-)
G250156 NA non-coding downstream 59827 6244806 ~ 6245017 (-)
G250155 NA non-coding downstream 60489 6243980 ~ 6244355 (-)
G250274 NA non-coding upstream 79853 6387726 ~ 6407587 (-)
LOC117599247 NA non-coding upstream 91811 6399684 ~ 6409707 (-)
LOC117599249 NA non-coding upstream 121369 6429242 ~ 6430122 (-)
G250383 NA non-coding upstream 406457 6714330 ~ 6717994 (-)
G250581 NA non-coding upstream 487419 6795292 ~ 6803066 (-)
kmt2d kmt2d,LOC108275851 other downstream 53487 6220467 ~ 6251357 (-)
c1galt1a LOC108276279 other downstream 241508 5969405 ~ 6063336 (-)
LOC113530966 NA other downstream 777374 5508596 ~ 5527470 (-)
si:dkey-126g1.9 NA other downstream 1539554 4762064 ~ 4765290 (-)
G249234 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other downstream 1765677 4472797 ~ 4539167 (-)
c16h1orf127 c15h1orf127,tardbp,LOC107570713 other upstream 941758 7249631 ~ 7323946 (-)
nmnat1 nmnat1 other upstream 1091920 7399793 ~ 7408257 (-)
ctnnbip1 ctnnbip1 other upstream 1168332 7476205 ~ 7509791 (-)
ttll10 ttll10 other upstream 2258783 8566656 ~ 8578600 (-)
LOC117599234 LOC108275963 other upstream 3460374 9768247 ~ 9771563 (-)

Expression


Co-expression Network