G251955


Basic Information

Item Value
gene id G251955
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 9488270 ~ 9489863 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU298225
GTAATACAAAGAGGATGGTGGTCTGCAGGCAGGAAGGacacaagaacagaaagctgaacaTCACCCAGCAAGCTGGATGCCAGACAGGAAACTACATTTGCACATCTAAAACAAGATTATGCAGTAAACTGAGAATGGGCTGGGCAAAGAAACTTGAACGTTTCCTCATCAGTATATCAAATTTTCCCCCATCGACACCAGGGGAGTCAATGGTTAGCTCATGGGCAAGGCACGGTACAGTAGTGTCACAACATATGCACTTTTAACTCACACTTCCAGGCCATTACCCCTTCTTCTCAGCACTGACTCAgattaaaaacagcatttttcacAAATATGCCAAAATTAAAGGTTGGTTTCAACTACAGAGAAACTGACTGGAAggtaaatattaaaagaaaaagaaccaACAGCCAAACAGCCTGCTGCTTTTACTATTGTTCGTGAATGTTGCAGAGTTTCACAGTGATGCCATCcttcttttcatttaaaatcatggCTCTTTCTCTAATCTCAAAGTTCCCATGGGCAGGCACTTCAGATATTACAGTGTTAACTGAGGAAAGGACATGTTGGCTGTAGGAGCAACGAGGCAGGCAATTAGAACATGCTAGCTGTGTAATGTCTTGCAAGTGCTAGCCTTTCAACCTCCATTATACACACAGAGGTCAAATCCCGTTTCCCCAAGCCAGACAGCTAGCGCTGCTAGAGCTAACACCAGGCTATTTTTAACCCGCCAAGAGGAAAGGGGGAAAGCCATTGCCACGCACTCAGTCTGCTACAATGAGTCAACTTGTATTTGCATCCTGCTAAAAAAGAGCCCTCTGTCTTGAATCTCACATTCAGTCACATCTCTCCTGCCAATCCTGAGAGGGAAAGAAACGAATAGGagattaaaaactttaaaaacatcTCAATAAATTCATGCTCAACCAGGTTTGCAGGTACATCACTGATGCCCAAGTATACCAATTACAATTCAACATCCAGCATTCAAAAAGCTAAACCTGTCACACGTCTCCATGTAGTTCTAATTAAAAAGTCTGAGGAATGGCGGAAAAAAGGAAACTACAAAAAGAGGCAACCATCATGGCAAACAGCTGAGGTTTCAAACTCGTTGCACTTTTCCATCCAGCCATGCAGACACGTTGTTCTTTTCTGGGACAGCTCGTGTCACAGGGTTCAGTGCGTCTCCAATTGTGTATTCAGTATATGATATGACTGAAGCAAGCCACAAAAACAAGGGTTTTAAAAAGTGGACGCAAAACATGACCGTAAACACTTCAAATGTGAGACCAAGGTGTCCTTGGTGTAAAAACAAAAGTCCCAAAGTACCAAAATCCaaagtgaggagaaaagcaATTAAGAAAACGAGTctgtcagggaaaaaaaaaaacatcccagagaGAATAGCCGCTCCGCCTTACAATAAGTAAAGGCACTCCTATTATCATTGATAGAGCAGGTAGTTCTTGAGTGAGGCGGGTAAAGGAAGTCCATGTATTTCAGTCAGTCGCTCCCGGCCCAATGCTAATCTCACTGAACGTCTGCACAGGTCCATGAGAGGCAGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU298225 True 1572 lncRNA 0.43 2 9488270 9489863

Neighbor

gene id symbol gene type direction distance location
gpr157 gpr157,LOC108434350 coding downstream 51106 9431703 ~ 9437164 (-)
LOC113530597 LOC108432612,LOC108276125,LOC108236859 coding downstream 63370 9417550 ~ 9424900 (-)
eno1a eno1,LOC108434336,LOC107703060,LOC107591100,LOC107716106,LOC103038459,LOC107593367,LOC107737561 coding downstream 81810 9395118 ~ 9406460 (-)
rerea rere,rerea,LOC107737560 coding downstream 100489 9221042 ~ 9387781 (-)
samd11 samd11,LOC107737557 coding downstream 319512 9110411 ~ 9168758 (-)
rap1gap LOC108276112,LOC108434374,LOC107716101 coding upstream 27424 9517287 ~ 9603357 (-)
slc2a1a LOC108276488,LOC108434426,LOC106565867,LOC107703064,LOC107591105 coding upstream 162568 9652431 ~ 9663954 (-)
eif4g3b eif4g3,LOC108434436 coding upstream 239511 9729374 ~ 9765854 (-)
lactbl1a LOC108275962 coding upstream 284620 9774483 ~ 9780995 (-)
dhrs3a dhrs3,dhrs3a,LOC108275517,LOC107703071,LOC107712670,LOC107737702,LOC107593436,LOC107687474 coding upstream 432315 9922178 ~ 9928130 (-)
LOC117599283 NA non-coding downstream 36102 9449297 ~ 9452168 (-)
G251924 NA non-coding downstream 48634 9439347 ~ 9439636 (-)
G251922 NA non-coding downstream 49459 9438501 ~ 9438811 (-)
G251868 NA non-coding downstream 104059 9371953 ~ 9384211 (-)
G251904 NA non-coding downstream 124760 9315682 ~ 9363510 (-)
G251963 NA non-coding upstream 8227 9498090 ~ 9498301 (-)
LOC117599281 NA non-coding upstream 215052 9704915 ~ 9708803 (-)
G252265 NA non-coding upstream 357253 9847116 ~ 9849696 (-)
G252311 vps13d,LOC107712684,LOC107687459,LOC107737673 non-coding upstream 405421 9895284 ~ 9895525 (-)
G252331 NA non-coding upstream 427566 9917429 ~ 9920148 (-)
ttll10 ttll10 other downstream 909670 8566656 ~ 8578600 (-)
ctnnbip1 ctnnbip1 other downstream 1978479 7476205 ~ 7509791 (-)
nmnat1 nmnat1 other downstream 2080013 7399793 ~ 7408257 (-)
c16h1orf127 c15h1orf127,tardbp,LOC107570713 other downstream 2164324 7249631 ~ 7323946 (-)
rps26 rps26,LOC103039794,LOC108433306,LOC100304575 other downstream 3180397 6304844 ~ 6307873 (-)
LOC117599234 LOC108275963 other upstream 278384 9768247 ~ 9771563 (-)
G252373 NA other upstream 539629 10029492 ~ 10029993 (-)
usp21 LOC108276040,LOC108432659 other upstream 970831 10460694 ~ 10469796 (-)
sinup NA other upstream 1146638 10636501 ~ 10638718 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other upstream 1519600 11009463 ~ 11015666 (-)

Expression


Co-expression Network