G252331


Basic Information

Item Value
gene id G252331
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 9917429 ~ 9920148 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU298662
taaaaccaaaccaaaacaaaaagattCATTTGAATCTAAAAACCACAAGTTTTATTAGGCTTTACAATATATACACTTAAAACAATGAGATTTACACAATGCGTGATTCACCTGACGTTTCTGGGCAGTTGTCTTTTCCTACTACCGTGTAACACTGCTGCACTGAACTGGTACGTCACATGTATCCTCTTACATAAGCATTTaaaatgatgatgtgatgatgtgatttaaAATGCTTACGTATCCCCACCGATGCGGGGAACTACTAACGCAAAGAAAAGTCCCTTCAAATTTGTTAACTTTGTTACTGGAAAACGCTCAAGCTGATTAAAGAAAGCATCACAGAAATTcacaaaatgaggaaaaacaaatcattcatATCTGACATTCTTTTACATTTGAAGTAGTTGGAAGATGGGTAGGCTATCATGACCTCAAATACACACAGCTGAGTAAGAGAGTGAAggatgaattaattaatttcaaggTCTTGTCTTTGGTCGTTTGTAAACCTGTTAACATACAATTACTAACTTGTAAACTTAACGTACATATATGCATAGATCagtgtattttaaatgattttaatagcagtggtatgatacaattagaaataaaaacaatgtgcagaaaataatattatgagaagaaaaaaagaggtgtTCAACTAAGCATCAGAGTGCAATTATTCAGTAGATTTGCTAATTTAATCCTtatatgtgtggtggtctgggaaaacccgtcagatgtcactgtggctgaattgtGGAAAACGGCCAGTGATTTACTTTGACATATCTACTACTTAAGAAAACAAGTAGTTTTCATCAAAACATCatggaaatgtatttatttgctttatattcTTGTCTAGGATTTCTACAAAGCTCATGGTGGGTAAGGAGctagtttaacaaacacagcagtaaatgcagtcagtctgcctaaagatgccTAAAACCTCACTAggtaagtgtgatttcctcacacagtgaaggTCATGCTTTGATCAGGTTGTCAGATGCTTCATTATGTGCTGTAGCAAAATGTACACAAGTCTAATCAAATTAGTTTGTAAACAGGTACCAAAATGGCCGCAACACTGctgcaccatcacatcatcatcaaaacagagaacaacaatgacagtggacAACAATTTTAAATTGTCTAATAAAAATTTGGCCAACAGTACAGAACTTTTACTTCAGCTGATAAGAGACTGAGGTGGATGATAAATAAACGTGAACTTATGTGATACCACATGCAACAGATAATCTAATTGTTGTATGTTAACCTGAATTCAAATGTAATCAATAATTGCTTTTAGACAATGAATGCATTGTGTGTCTCAAGTGTAACTGGAATTGAATCTTGGGCAtaaccagaatttaaaatgctctaactttacttgtggttgagatacgtgaaaagaaaaaaacacatttcagttcagaaaaacTCGCACTTTTCACAATTTCATATTGTAGAAAATGTCACAGTTGAAATGTCATATGTGaatggttttcccagactgccacacaaaTATATTTAGTGGTAGACAATGGATAAATGAAAATCAGCATCAATCAGGGGTACAAATTTTGAGGTATAAAAAATAAGATATCATGCAAAAGGAAGGAGGATCTAataattaagaaaagaaaaaaaagaacaccagCAACAAAAAAGGCACCAAATCTTGCACAATCTTGCATTTGCAATCTTTGCCAGATTAGCAATTGTTTATTTGCAACAAAAGCAATAAATCTACATGTCCAGGCCAAATGTCAAAGTATTCGTGATTATTGTAgtgattaaattattattgagTCTCATTCTGTGCTATAGACTTTAGTGAACTGTTTGTGTTTCAAACAGCAGGCCTATATATTATTACTGAAGATttacaagattttattttttttcaaatgccaCTATCATGGAAAATAGTTTATAGAAGGAAaagagatataaataaataaaattctagtGGTTTCCTTGTCAGGGCTCTTCGGCatgatgaaatattatttacacttcCCTGTAGCTgttaatcgtgtgtgtgtgtgtgtgtgtgcactgtacTTACGCTACAGTAAGCAATGAGGGCAGCAGCAATTTCTTACATCTACATCAGTGCAATTTCCTCAACCACACAATTCTCTCATTTACATAGAAAACTATTTTAAAGGCAGTTTTGTACATTAATCTTGTCGCTCAAATTTCCACAATATGTACATGACAAGTGACATACTGGCTATAACTGGCCTATAAACAAACATATACAAGATTAGTTTTATGCATAATTTTAGCAACAGTAACCACTCATAAACTATATAGACATCTGTAAAACAAAATAGCAATCTTCTATGTTTAACAGAGGAGTAAAATCTTGCATATTTGCCAGTCAAATGTGCTTGATGGAGAATATTACAGTAGACTAGTTTGCATCATGAAACCAATCCTTCAGTGAGAGCATGTCTGCCTAAATGTGAGTACTCACTTTTCATGTATGCCTTAAAAACAGTGcaagaaaataaacagacatCTACCAAATGCGAGTTAATTTCGTCAGCAGTCCAATAGTAAACTATCCTCGTTCTCACTGGGGGGTAACATGAGCTGCTGCTCATAGTAAAGGCTCTTGGCGTAGTTGACTTCTTGCGAGATCTTCACTGCCAGGCTCTCACTTCGTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU298662 True 2700 lncRNA 0.35 2 9917429 9920148

Neighbor

gene id symbol gene type direction distance location
lactbl1a LOC108275962 coding downstream 136434 9774483 ~ 9780995 (-)
eif4g3b eif4g3,LOC108434436 coding downstream 151575 9729374 ~ 9765854 (-)
slc2a1a LOC108276488,LOC108434426,LOC106565867,LOC107703064,LOC107591105 coding downstream 253475 9652431 ~ 9663954 (-)
rap1gap LOC108276112,LOC108434374,LOC107716101 coding downstream 314072 9517287 ~ 9603357 (-)
gpr157 gpr157,LOC108434350 coding downstream 480265 9431703 ~ 9437164 (-)
dhrs3a dhrs3,dhrs3a,LOC108275517,LOC107703071,LOC107712670,LOC107737702,LOC107593436,LOC107687474 coding upstream 2030 9922178 ~ 9928130 (-)
igsf21b igsf21,LOC108275566,LOC107712688,LOC107593375,LOC107687403,LOC107737570 coding upstream 9120 9929268 ~ 9942531 (-)
arhgef10lb LOC108275881,LOC108434548,LOC107591110,LOC107712685,LOC107703072 coding upstream 24703 9944851 ~ 9982274 (-)
LOC113530673 rpl22,LOC102779685 coding upstream 78729 9998877 ~ 10002568 (-)
icmt icmt,LOC107703075,LOC107591113,LOC107593379 coding upstream 97343 10017491 ~ 10022500 (-)
G252311 vps13d,LOC107712684,LOC107687459,LOC107737673 non-coding downstream 21904 9895284 ~ 9895525 (-)
G252265 NA non-coding downstream 67733 9847116 ~ 9849696 (-)
LOC117599281 NA non-coding downstream 208626 9704915 ~ 9708803 (-)
G251963 NA non-coding downstream 419128 9498090 ~ 9498301 (-)
G251955 NA non-coding downstream 427566 9488270 ~ 9489863 (-)
G252479 NA non-coding upstream 134729 10054877 ~ 10056083 (-)
LOC117599207 NA non-coding upstream 259640 10179788 ~ 10181888 (-)
LOC117599279 NA non-coding upstream 323893 10244041 ~ 10288684 (-)
G252610 NA non-coding upstream 476247 10396395 ~ 10396740 (-)
G252783 NA non-coding upstream 735166 10655314 ~ 10655522 (-)
LOC117599234 LOC108275963 other downstream 145866 9768247 ~ 9771563 (-)
ttll10 ttll10 other downstream 1338829 8566656 ~ 8578600 (-)
ctnnbip1 ctnnbip1 other downstream 2407638 7476205 ~ 7509791 (-)
nmnat1 nmnat1 other downstream 2509172 7399793 ~ 7408257 (-)
c16h1orf127 c15h1orf127,tardbp,LOC107570713 other downstream 2593483 7249631 ~ 7323946 (-)
G252373 NA other upstream 109344 10029492 ~ 10029993 (-)
usp21 LOC108276040,LOC108432659 other upstream 540546 10460694 ~ 10469796 (-)
sinup NA other upstream 716353 10636501 ~ 10638718 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other upstream 1089315 11009463 ~ 11015666 (-)
abhd6b LOC108275644,LOC108436291 other upstream 1100383 11020531 ~ 11025009 (-)

Expression


Co-expression Network