dhrs3a (dhrs3,dhrs3a,LOC108275517,LOC107703071,LOC107712670,LOC107737702,LOC107593436,LOC107687474)


Basic Information

Item Value
gene id dhrs3a
gene name dhrs3,dhrs3a,LOC108275517,LOC107703071,LOC107712670,LOC107737702,LOC107593436,LOC107687474
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 9922178 ~ 9928130 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920318.2
CTTTCTCCCTTAGCAGTGCGTTAGGCTCGTAAGGCACACTCAGTGCGCGCCAGCCACAGCAACACTTCACTCACACGACTTTCAGCTCCACTGGGACACCTGGCTCACAGGTTGAGTCCACACTAGAgggctgttttctttttgttttggttttttttccctgattttgACTCCAGGAACGAGAGCTGCTGCCAGCTGGAGAGTTCTAAGCACGCTTAAGCATACACTTGGACATTTCTCTTGATTCTCTTGAATGATGGATCTGAAGTTGTTGTGCTGCGCGGTGCTTTTCCCTATCCAAATCTCCCTGTGCGTCCTGAAAGCCGCGGTGCGTTTGCTGATGCCGCAGAAGCGCAAAGATCTCGGCGTGGATGTGGTGCTCATCACTGGAGGAGGCAGAGGAATCGGACGACACTTGGCCAAAGAATTCGCCAAGCAAGGAGCCAGAAAGatcatTCTTTGGGGCCGTACGGAGAAGTGCCTGCGAGAGACGTGTGAGGAGATCTCCATGACGGGGACAGAATGCCACTactttgtgtgtgatgtgggaAATAGGGAGGAGGTGTACGAACAGGCCAAGGTGGTGAGGGAAAAGGTTGGGGATGTGACTATTCTGGTGAACAATGCAGCAGTGGTTCATGGGAAAAGTCTGATGAACAGTGACGACGATGCCCTTCTAAAAACGCAGCACATCAACACACTTGGGCAGTTCTGGACCACGAAGGCTTTCTTGCCTCGCATGCTGGAGCTGCGCCATGGCCACGTGGTGTGCATCAACTCCATCCTCTCGCTCTCTTCCATCCCTGGGGCCATCGACTACTGCACATCCAAAGCATCAGCCTACGCCTTCATGGAGAGTCTCACTCTGGGCTTGCTGGACTGTCCAGGAGTGGACTGCACCACCATACTACCcttccacacagacacagagatgtTTCAGGGCATGCGAGTCAGGTTCCCTCAGCTATTTCCGCCTCTGAATCCTGAAATGGTGGCTCACAGGACTGTAGATGCAGTCAGGACCAACACTGCGTTCGTTGTGCTGCCATGGACCATGCACTTTCTCGTCATCCTCAAGAGccTCCTGCCACAAGGTGCTCTGGAGGAAATCCACAAGTTTGCAGGAAGCTATACGTGCATGAACACATTCAAGGGACGGACTTAAATGAGTTACTGCAGGGAAGGATGGAATGTGAAAAGTCCTTTAATCAAACTGAATGCAAGCACTGTGTCCCTGGAACAGCAAACGAGTTGTAGAGAAGGACTTCAGGATCATGGGGATCGGTGTATCACGGTGGCTTGTTTATCCAGCATAAATTTCACAATGGATGTAATTCATCATGAAGTCATGATTTGTAGTTGCGTCTGCTGGAAATATTGATGTGTTAGTCTAAAAGACTCACAGGCTTGCTGACGAGCGTGCACCGTGAGCTCGGTGGGAATACAGACTGAATAACAGATAgattttctgaaagaaaaagttCTGGAAACATCTGAAGTCTTCAAGTACAATTACACACAGATGCCATGGATTTAGTGAAAGTTGTAGAATGTTACTAATTTCACATGCTTTTTAGGTAACTCGATGCAAGTTCCTTCTCCAGCATGTTGTAAATAAATCCAGCGTATCTATCTCAACATTACTGTCAACACTAAATAAACAGTATTTGATAAGAAAA

Function

symbol description
dhrs3a Predicted to enable NAD-retinol dehydrogenase activity. Acts upstream of or within regulation of retinoic acid receptor signaling pathway. Predicted to be active in lipid droplet. Is expressed in several structures, including mesoderm; nervous system; optic fissure; presumptive mesoderm; and pronephric duct. Orthologous to human DHRS3 (dehydrogenase/reductase 3).
dhrs3 Predicted to enable NAD-retinol dehydrogenase activity. Predicted to be involved in regulation of retinoic acid receptor signaling pathway and retinoid metabolic process. Predicted to act upstream of or within several processes, including animal organ morphogenesis; negative regulation of retinoic acid receptor signaling pathway; and regulation of ossification. Predicted to be located in endoplasmic reticulum membrane and photoreceptor outer segment membrane. Predicted to be active in lipid droplet.

NR:

description
PREDICTED: short-chain dehydrogenase/reductase 3-like isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K11146 DHRS3; short-chain dehydrogenase/reductase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920318.2 True 1679 mRNA 0.48 6 9922178 9928130

Neighbor

gene id symbol gene type direction distance location
lactbl1a LOC108275962 coding downstream 141183 9774483 ~ 9780995 (-)
eif4g3b eif4g3,LOC108434436 coding downstream 156324 9729374 ~ 9765854 (-)
slc2a1a LOC108276488,LOC108434426,LOC106565867,LOC107703064,LOC107591105 coding downstream 258224 9652431 ~ 9663954 (-)
rap1gap LOC108276112,LOC108434374,LOC107716101 coding downstream 318821 9517287 ~ 9603357 (-)
gpr157 gpr157,LOC108434350 coding downstream 485014 9431703 ~ 9437164 (-)
igsf21b igsf21,LOC108275566,LOC107712688,LOC107593375,LOC107687403,LOC107737570 coding upstream 1138 9929268 ~ 9942531 (-)
arhgef10lb LOC108275881,LOC108434548,LOC107591110,LOC107712685,LOC107703072 coding upstream 16721 9944851 ~ 9982274 (-)
LOC113530673 rpl22,LOC102779685 coding upstream 70747 9998877 ~ 10002568 (-)
icmt icmt,LOC107703075,LOC107591113,LOC107593379 coding upstream 89361 10017491 ~ 10022500 (-)
LOC117599272 LOC108275587,LOC108275676,LOC108275637 coding upstream 106143 10034273 ~ 10035819 (-)
G252331 NA non-coding downstream 2030 9917429 ~ 9920148 (-)
G252311 vps13d,LOC107712684,LOC107687459,LOC107737673 non-coding downstream 26653 9895284 ~ 9895525 (-)
G252265 NA non-coding downstream 72482 9847116 ~ 9849696 (-)
LOC117599281 NA non-coding downstream 213375 9704915 ~ 9708803 (-)
G251963 NA non-coding downstream 423877 9498090 ~ 9498301 (-)
G252479 NA non-coding upstream 126747 10054877 ~ 10056083 (-)
LOC117599207 NA non-coding upstream 251658 10179788 ~ 10181888 (-)
LOC117599279 NA non-coding upstream 315911 10244041 ~ 10288684 (-)
G252610 NA non-coding upstream 468265 10396395 ~ 10396740 (-)
G252783 NA non-coding upstream 727184 10655314 ~ 10655522 (-)
LOC117599234 LOC108275963 other downstream 150615 9768247 ~ 9771563 (-)
ttll10 ttll10 other downstream 1343578 8566656 ~ 8578600 (-)
ctnnbip1 ctnnbip1 other downstream 2412387 7476205 ~ 7509791 (-)
nmnat1 nmnat1 other downstream 2513921 7399793 ~ 7408257 (-)
c16h1orf127 c15h1orf127,tardbp,LOC107570713 other downstream 2598232 7249631 ~ 7323946 (-)
G252373 NA other upstream 101362 10029492 ~ 10029993 (-)
usp21 LOC108276040,LOC108432659 other upstream 532564 10460694 ~ 10469796 (-)
sinup NA other upstream 708371 10636501 ~ 10638718 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other upstream 1081333 11009463 ~ 11015666 (-)
abhd6b LOC108275644,LOC108436291 other upstream 1092401 11020531 ~ 11025009 (-)

Expression


Co-expression Network