LOC113530542 (LOC108275757)


Basic Information

Item Value
gene id LOC113530542
gene name LOC108275757
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24191180 ~ 24202172 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920671.2
ATGGAGAAACtgcgcCGCTCAGTGGCCGTGTGCAAGGAGGAACTGAGCAgtttcagtaaaataaacatcCACATCTGTGCAACATCAGCTCcgagcagagacagagacagagacacacttCAGATCATGTCTTCACACGaTGACTGGGAGACTAAGCTGGAGATCAGGGCGTGTAGTTTTGAGGCCAGTCCAGCAGGGGGCGACAAACACAGAGCCTGCAGCTCTCCTAATGACTCCACTGGCAAAAGTGAGACGTCTACAGAAATCTTTGGCACCGATCCTTTAAGAACTCTGGGAGAAATCCTCGCCTACTGTCAGGTTATGTACGAGGCCATTCAGAAGCTGGATGAGAAGTTTGAGCTGCTGCAGGCGAGAGTGACGCACATTCAGGAAGATCAGATACACGTTGAGGAGGATCAGTCCGAGATTTACACGCTGGACGATACAGAGCCCGACCAGATAAATGACGAATCAGCAGAAACGACCTACCATGTCCTCCATCACCAAGTTCCTCCCTCGGTTCCTCCATCTCCTGAAGGTTCAAGAACCCTAGACCTTGTCGTTAGCTCAGAAAAACCCACACACCCCAAACCGTCTCCTCAGAATCAGCCCCAACAGTCAGGTTCGTCCTCCTCACCATGTCGAGCTGTGAGAGACGTGCTCTTACAGCAGCGCAACGTTCCAGAAGATCCTCCCGACACCAACGCTGGACACTCGGCATCTCCGCAAACCGTGAGGGAAATCTTACAGCAGCCCCAGAAAAGTCCTGATCCCCAACGACACAACGCAGCCGCAGGAAGCAGGAAGTTTGTCATCCCCAGTAGCGTGTTGATTATGGCCAGCGCGATGGCGAGGCCGACGGCAGCCGCTCGCTTCCTCATGCGCAGCCTTTTCTCCCGTCAGGAGCTGCTGCACGGGAGCATTAGAGGATACACGGCTAGAGGATTAAAAAAACTCAACCCAAACAAAATCAGCGCCATACGAGAGTGGGCGCAGATGACATTCCCGGAACATGACCTGCGTGAGAAAGGTAAAGACTGGAAGGCCTGTCTGGCTGTTATGAACGAAGGCGCCAGACACGTCCGCCTGAAGGACAGAAAGCGTAAGTTTAAAGCGGTGAGAGAGCCGAGTGAACAAGTGGCATCAGTCCAAGAATTCAAACCCGCGCCCACTGCCGAGATCGACGTGGAGCTCTCAGACGGTGACAGCGATGACCTACAGCAGACGACAGCGCTTAAAAACAAACTCAAAAGAGAGTCTGATGAAGAGCCGCTGTCGGAAAATGACTATTCCTATGAGCCGGGTGCTCAGGTGTATCTGGGTCATCCGGATCGGGACGTGAAGGTGCCTCAGTTTGCGATGTACTCAGCGTTACAGAGGCCGAATCCTCCGCTCGTCGCTCGCTACCTCATCAGATTCATCTTCCCAGAGGAAGTGCTGGTGCAGAGCAACGTGTACGGCAACGCCAAGTACGGCATCCTGCCTCTGGACCACAACAAGATCTCAGCACTGAGGGaGTATCTGTGTGAGCGTTTCCCCTACATGAAGCTGGACGAGGACGGACCCAACTGGAAGGCGTGTGTCTACGCCATCAACGGCGCCATCCGGAAAACCAGACACACTCTGAAGAAATGTCACAAACAGGCGCGAGAATCGACCCTGATGACATCATGACCtcgaacaacaacaacaccacaacCGCCTGATCACTTTGccatttgtagttttttttttttttgcaaggactacatgcataaaaaatacacaagcaatgttaatgtcattttaatttatttgcaaaTAGTAACAGTTCCAACTTGAATAGaaattgttaataaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920671.2 True 1850 mRNA 0.51 11 24191180 24202172

Neighbor

gene id symbol gene type direction distance location
scp2b scp2,LOC108275753,LOC108440020,LOC104921750,LOC108246649,LOC102203975,LOC100698399,LOC106529297,LOC106928213,LOC103139825 coding downstream 27001 24161230 ~ 24164179 (-)
podn podn coding downstream 36692 24140115 ~ 24154488 (-)
LOC113530544 LOC108275752,LOC103033099,LOC108440029,LOC107737066,LOC107687592,LOC107590493 coding downstream 118325 24065262 ~ 24072855 (-)
tut4 zcchc11 coding downstream 144526 24023625 ~ 24046654 (-)
LOC113530771 LOC108276005 coding downstream 170231 24013748 ~ 24020949 (-)
nhsa LOC108275756 coding upstream 2854 24205026 ~ 24269375 (-)
LOC113530540 LOC108275466 coding upstream 119500 24321672 ~ 24340163 (-)
LOC113530519 LOC108261257,LOC108270753 coding upstream 149723 24351895 ~ 24370680 (-)
LOC117599267 LOC108273545,LOC108268894,LOC108261292,LOC108270753,LOC108263117,LOC108264971 coding upstream 185640 24387812 ~ 24447327 (-)
LOC117599268 NA coding upstream 193957 24396129 ~ 24402716 (-)
LOC117599232 NA non-coding downstream 51074 24136489 ~ 24140106 (-)
G260371 NA non-coding downstream 310852 23880087 ~ 23880328 (-)
G260369 c15h1orf52 non-coding downstream 315864 23874519 ~ 23875316 (-)
LOC117599235 NA non-coding downstream 318305 23868507 ~ 23872875 (-)
G260071 NA non-coding downstream 668472 23522215 ~ 23522708 (-)
G260548 NA non-coding upstream 11162 24213334 ~ 24225958 (-)
G260581 tmem27 non-coding upstream 103057 24305229 ~ 24306670 (-)
G260823 LOC108273545,LOC108268894,LOC108263642,LOC108270753,LOC108261282 non-coding upstream 148083 24350255 ~ 24435869 (-)
G260833 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 non-coding upstream 246386 24448558 ~ 24453499 (-)
LOC117599219 NA non-coding upstream 396939 24599111 ~ 24600250 (-)
LOC113530810 LOC108275656 other downstream 211485 23973365 ~ 23979695 (-)
G260310 NA other downstream 427017 23763674 ~ 23764163 (-)
e2f1 e2f1 other downstream 873716 23308899 ~ 23317464 (-)
LOC113530288 vstm2l other downstream 950833 23192257 ~ 23240347 (-)
si:ch73-217n20.1 NA other downstream 1210194 22961578 ~ 22980986 (-)
reps2 reps2 other upstream 71565 24273737 ~ 24316415 (-)
LOC113530517 LOC108273546,LOC108270753,LOC108268894,LOC108273219,LOC108261257,LOC108273545,LOC108270747,LOC108261406 other upstream 172101 24374273 ~ 24386255 (-)
tent5ab LOC108275717 other upstream 298957 24501129 ~ 24508468 (-)
si:ch1073-157b13.1 LOC108276418 other upstream 585518 24787690 ~ 24795423 (-)
G260947 NA other upstream 678786 24880958 ~ 24883145 (-)

Expression


Co-expression Network