LOC113530597 (LOC108432612,LOC108276125,LOC108236859)


Basic Information

Item Value
gene id LOC113530597
gene name LOC108432612,LOC108276125,LOC108236859
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 9417550 ~ 9424900 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312156.1
CCAAAAAAAGATTGCAGGCATTCATGTCGTGATCAGACCTTATATTAGGCGTTATTTTACAGTTTCAGACACAttgtcactgtctctctcattgTCAAAAGACATCTATATGGAGAACCCTGGGGAAAGAAAAGGGAAACTCACTCTGCTGTTGGCTCTTGCTACACTGATCTCTGCATTTGGCTCGTCTTTTCAGTACGGCTACAATGTGGCTGTTATCAACTCCCCAGCCCCGGAAATGCAGAGGTTCTACACCAGCGTGTACGAGAGTCGCAATAGCACGGTCACCAACGGTGTGTTAACTCTGCTGTGGTCCCTGACTGTGTCCATGTTCCCCTTGGGGGGGTTTTTTGGCTCTCTCATGGTGGCACCACTGGTGAATAATTTAGGAAGGAAAGGTACCTTGCTGTTCAACAACATCTTCTCAATCGGCCCTGCTATAATGATGGGTGTGAGCGAGGTGCTGGGCTCTTTTGAGATCATTATCGTGGGTCGCTTTTTTGTGGGCATCTGTGCTGGCCTTTCATCCAATGTGGTGCCAATGTATTTGGGAGAACTGGCCCCAAAGAACCTGAGAGGAGCTGTTGGGATTGTGCCTCAGCTTTTCATTACTGTTGGCATCCTCACCGCCCAGGTGTTTGGTATCCGAAATATTCTTGGCAACGCCGAAGGTTGGCCTATCATGCTGGGTCTCACTGGCATTCCTGCTCTCATTGAGCTACTTGTGTTGCCCTTCTTCCCTGAGAGTCCCCGTTACATGCTCATTCAGAAGGGTGACGAAAATAAAGCCAGGACTGCACTGCAGCGTCTGAGAGGATGGAAGGACGTAGAAGAGGAGATGACAGAGATGCGACTTGAAGCTCAGTCAGAGAAAGCCGAGGCCCAGCTTTCTGTGCTCAAGCTCTTCACCTTCCGCTCTCTGCGCTGGCAGCTGTTGTCCATAATTATCATGAACATGGGCCAGCAGTTGTCAGGAGTGAACGCTATTTATTACTATGCGGACAGCATCTTTGCTTCCGCCGGAGTGAACGAGAACCACATTCAATATGTGACTGCTGGAACAGGGGCTGTGAATGTATTCATGACCTTTGCTGCAGTGTTTATAGTGGAAGCCTCTGGCAGGAAGCTGCTGCTTCTGATTGGGTTCGGGATCTGCTGTGCAGCCTGCGTGATCCTCACTGTAGCTCTCAGTCTGCAGGAGACCCTGCAGTGGATGCCCTATGTCAGCATTGCCTGTGTCATCATTTATGTCATTGGCCACGCCATAGGCCCAAGTCCAATTCCGACCGTGATTACCACTGAGATTTTCCGCCAGTCCTCAAGACCTGCAGCTTTTATGGTGGCAGGCTCCGTGCACTGGCTTTCAAACTTCACTGTAGGCCTGGTGTTCCCCTTCCTAGAGAAAGGTCTAGGGGCCTACAGCTTCATCGTCTTTGCATTCATCTGCCTGGTCACACTCATCTACATTTGGGTGGTCATCCCAGAAACCAAGGGTTCCACCTTCTTGGAGATCAGCAAGCTGTTTGCTAAGAGGAACAAAGTGGAGATTGCGGTGGAGGATGAGGGTTCTAGGATGCAAGAGGCTGAAGTGACAGACCATGTAAAGGATGTAATTACAACCTTCTAAGCACGGGATGGCTTACTGAGTCctttttatgtatatatcaGACCTTTAGTCTAGGTCTGAAGCTCTGTATACATTGGtttgaaatcatatttttatgttGTGTCTCCTTTCAACTGATGACTAGAAAGCAGACTGCAGACTAACTATAAAGGGCAtcaggtgtttaaaaaaaagtcggTCTGCTTCCTAAAGaacatacatcatacatcagcTGAAAGTGTAATTATATGTCTGACATTGTCAGGCTGCACCTAGTGTTGATGTTTAATAGCCAACATAATTATAGTAGAACAAATCCTGGCTCTGCTAGTATTACATGTGTGCACTGCAATTTTACAAGCTGTCTGGAACCTGAGATCAGACCAAGGCAAGTTCTAAAATCTGGTGTAGCAACAGTTGAATGAATCAGCAAGAAGTTTCGCATTCTGTTGACATGTTTTTACTTATTAAGTGAACTTATTCATGCTTTCAACTATGTCCAGCAAACACGATGAAGTAGTACACAGTTTCATTGATACTCCATGTAAAACCCTTCAACTGTTAAAATGACCCTTACACTTTTCTATGACTTTAGGTTTAGAAATCCTGACTAAAATGcactattttctctttttttttttaatataatataagattaGCCAAAGAACTGCTGAGATATCCTAGAGTTTACTTATTACTTGTGTGTATAAAGTTTAACTTCAAGTTGGAAAACTTTAACtacatgttggaaaaaaaatatatatcttgtttgttactttattttaaaaacatattctattaaaatatgcaaataatttttta

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08143 SLC2A5, GLUT5; MFS transporter, SP family, solute carrier family 2 (facilitated glucose/fructose transporter), member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312156.1 True 2428 mRNA 0.44 12 9417550 9424900

Neighbor

gene id symbol gene type direction distance location
eno1a eno1,LOC108434336,LOC107703060,LOC107591100,LOC107716106,LOC103038459,LOC107593367,LOC107737561 coding downstream 11090 9395118 ~ 9406460 (-)
rerea rere,rerea,LOC107737560 coding downstream 29769 9221042 ~ 9387781 (-)
samd11 samd11,LOC107737557 coding downstream 248792 9110411 ~ 9168758 (-)
klhl17 klhl17,LOC107687417,LOC107572648,LOC107737556 coding downstream 350226 9048022 ~ 9067324 (-)
plekhn1 plekhn1,LOC107572645,LOC107591125 coding downstream 379556 9023444 ~ 9037994 (-)
gpr157 gpr157,LOC108434350 coding upstream 6803 9431703 ~ 9437164 (-)
rap1gap LOC108276112,LOC108434374,LOC107716101 coding upstream 92387 9517287 ~ 9603357 (-)
slc2a1a LOC108276488,LOC108434426,LOC106565867,LOC107703064,LOC107591105 coding upstream 227531 9652431 ~ 9663954 (-)
eif4g3b eif4g3,LOC108434436 coding upstream 304474 9729374 ~ 9765854 (-)
lactbl1a LOC108275962 coding upstream 349583 9774483 ~ 9780995 (-)
G251902 NA non-coding downstream 30623 9312676 ~ 9386927 (-)
G251868 NA non-coding downstream 33339 9371953 ~ 9384211 (-)
G251904 NA non-coding downstream 54040 9315682 ~ 9363510 (-)
G251909 NA non-coding downstream 55422 9359834 ~ 9362128 (-)
G251903 NA non-coding downstream 93715 9310040 ~ 9323835 (-)
G251922 NA non-coding upstream 13601 9438501 ~ 9438811 (-)
G251924 NA non-coding upstream 14447 9439347 ~ 9439636 (-)
LOC117599283 NA non-coding upstream 24397 9449297 ~ 9452168 (-)
G251955 NA non-coding upstream 63370 9488270 ~ 9489863 (-)
G251963 NA non-coding upstream 73190 9498090 ~ 9498301 (-)
ttll10 ttll10 other downstream 838950 8566656 ~ 8578600 (-)
ctnnbip1 ctnnbip1 other downstream 1907759 7476205 ~ 7509791 (-)
nmnat1 nmnat1 other downstream 2009293 7399793 ~ 7408257 (-)
c16h1orf127 c15h1orf127,tardbp,LOC107570713 other downstream 2093604 7249631 ~ 7323946 (-)
rps26 rps26,LOC103039794,LOC108433306,LOC100304575 other downstream 3109677 6304844 ~ 6307873 (-)
LOC117599234 LOC108275963 other upstream 343347 9768247 ~ 9771563 (-)
G252373 NA other upstream 604592 10029492 ~ 10029993 (-)
usp21 LOC108276040,LOC108432659 other upstream 1035794 10460694 ~ 10469796 (-)
sinup NA other upstream 1211601 10636501 ~ 10638718 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other upstream 1584563 11009463 ~ 11015666 (-)

Expression


Co-expression Network