G265809


Basic Information

Item Value
gene id G265809
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 8664782 ~ 8665655 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU314950
tcctgaatttattgaattgaattcaattgAATGTTCACATACTATGAATAAAAGCCAGGGATCATTTTTGGGATCATTAAATTGTTTTGTACAGTCCTTTAAATCAATTTTGAGTGTTGCTGGGAAGATCAAAGCAAATTTGACATGACACCCATGTAATGCTTTCTTGCTTTCCTTAAATGCATTGCGTTTCTCCTGTGTGGCACAAGTCGTCAGGAAATATCAGTATGGAGTTGAAGCCGTCTCTTCTCTCTGGACGCTTGCAGAGTCAGGTCTGTCATCCCGGAGCGCATCTATCTGGAGACAAACTGGCGATCGCACTCGTTCATTTGGCTGGAGTCATGGGGCAAGACCTCCATGCACCCGTTCAGTGTCCCAACCACAGGGTGATGAAGCGATGCCTAGTAGCTGTGGCAACATCTCTTCGACGAAAGCAGTCATGTCAACCCCTTTGCTGCCCTCCGGAATCCCAATAAACTTCAAGTTGTTACATCTGCTTCTATCCTCCATATCAGTGAGCTTATCTCCCTTCTATATCACAAATTCTCTCCATCAGCACGGACAATTTTCCTTCCATAGATGTTGTAGCCTTGTGGATCCCTTTCAGGATTTTGTCAGGCATTTGTTTTAGATTGTTAAAAATACTTGTGATATTCTCGGCCACATTTCCCTTGCCCCCAAGGGGTTTGTCAGTGTCTGACTCTTGCGCTGTCATCACTAGTGCCATTTTGGGTCGTGTACCAACctctcagggatttttttttatggttgaCTGCACTGTTTTCTGcctgtgtttcatttttcttgTACATTAAGCTCTTTCCTACTTCTTTTAAGAGAAAGGTTGTCGAGTTAACCGCACAGGATTATCAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU314950 True 874 lncRNA 0.43 1 8664782 8665655

Neighbor

gene id symbol gene type direction distance location
LOC113544932 NA coding upstream 388459 8275047 ~ 8276323 (+)
LOC117595648 NA coding upstream 447514 8200080 ~ 8217268 (+)
cetn3 cetn3,LOC107589032,LOC107602084,LOC107758597,LOC107658563,LOC107689496 coding upstream 720654 7937228 ~ 7944128 (+)
scarb1 scarb1 coding upstream 754527 7890041 ~ 7910255 (+)
ubc ubb,ubc,LOC107553588,LOC100190459,LOC100194618,LOC105015226,LOC107658630 coding upstream 800639 7860866 ~ 7864143 (+)
rnft1 rnft1 coding downstream 49774 8715429 ~ 8731985 (+)
si:ch211-244c8.4 LOC108277057 coding downstream 406774 9072429 ~ 9076274 (+)
zdhhc20a zdhhc20a,LOC108276908,LOC107743391,LOC108411113,LOC107697429,LOC107589301 coding downstream 469505 9135160 ~ 9151699 (+)
smyd4 smyd4 coding downstream 551125 9216780 ~ 9252133 (+)
uspl1 uspl1 coding downstream 699692 9365347 ~ 9400306 (+)
G265802 NA non-coding upstream 7696 8656698 ~ 8657086 (+)
G265801 NA non-coding upstream 13415 8651021 ~ 8651367 (+)
G265797 NA non-coding upstream 18581 8643557 ~ 8646201 (+)
LOC113523758 NA non-coding upstream 21300 8549858 ~ 8643482 (+)
G265699 NA non-coding upstream 24189 8640274 ~ 8640593 (+)
G265808 NA non-coding downstream 1967 8667622 ~ 8668664 (+)
G265810 NA non-coding downstream 12471 8678126 ~ 8681571 (+)
G265823 NA non-coding downstream 22178 8687833 ~ 8689686 (+)
LOC113523760 NA non-coding downstream 25382 8691037 ~ 8693401 (+)
G265884 NA non-coding downstream 155821 8821476 ~ 8821683 (+)
G265696 NA other upstream 25054 8633635 ~ 8639728 (+)
LOC113544929 NA other upstream 310941 8329705 ~ 8353841 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other upstream 477171 8175514 ~ 8187611 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other upstream 1538536 7116051 ~ 7126246 (+)
G264948 NA other upstream 1582341 7066871 ~ 7082441 (+)
G265807 LOC107756568 other downstream 3159 8668814 ~ 8669797 (+)
LOC113534874 LOC108276751 other downstream 591288 9256943 ~ 9264111 (+)
G266161 NA other downstream 670146 9335801 ~ 9336290 (+)
LOC113543674 NA other downstream 754010 9419665 ~ 9424855 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other downstream 1038705 9704360 ~ 9762697 (+)

Expression


Co-expression Network