G324799


Basic Information

Item Value
gene id G324799
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1592483 ~ 1619873 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU384893
tattttttatagttagTTTCTTTTGAACTGTGTGACAGTAGCACTTTCCGCACTTAACATTAAACCGTTGATCTTAATACACCAGTATAACTGTAACATCCAGTATGGAAACATCTACAGCAACGCTTCATGGGGAGACACGGACACAAATACTGTTCAACTCAAAAGCACCTCcaggtgaaaggaaaaacaaacacacacacacacacacacacacacacacacacacacacat
>TU384895
ctttgtaaatgtaatatattgcaGTATGAGAAATATGAATGCATGTAAGACATGACATTATTCAGCATATAGCTGGTTGGCAGCTATATGACAAATCTATCgctaatttaaaaacaaaaaagtaatcaAAAAAATAGACACCAACTAAAACTGCACTGGACAAATGAAATGGATTGATAATCCACTGATCACTGtcatggaagaaagaaagaaagaaagaatcttcAAGCAGGACATGATCTCAATCTTTAGATGTGCCTTTTATACgatttcattacatttcatcagTGTCACCTGTCTGCACCTTCTGATCACTGAAATCagtacttatatatatatatatatgaattctTTATATTATTCTCTGAAgcttgcattttattattatttttaaacagtggccctGAAACATCATCATAATTTAATGCTGTTCAAAATTTGGAATCATTTTTACAACCAAAcccttttccagaactttgtcctggacttgttttgatcgctgcttggtcttcatgatgctctTTGTCCAGGTAACAAACTCCaggttcttccaggaacaggtgtatgtACAGAatattgagatcacatgacactttcaTTGCTCACAATTCAACTCTGATTAAACcgattatgtgacttctgattgCACCAAAATTATTTAAGGGGTTTCCATACCAGCTTATGTGCtccaatttttatttgtaaataatataaataaataaaaagtgacaATTCAGTCCCTTTTATTTCCAGGTtttaacactgtaaaatgtggaaaagttaaagggggcaaatacttatgcaagccagtCTAAGTGCTGAACTTGGCACCATTTATCACTCActcatcttcaggaccatgacacaatatattgaaattattttaataaatccaGTGATTATACCGTAGCCCTTTAATGCTACTTAATGTTAAAGACAGATAATAATCctgtataaaatgaataatttgacATCCAGGTATTTttcaaactatttattttttatagttagTTTCTTTTGAACTGTGTGACAGTAGCACTTTCCGCACTTAACATTAAACCGTTGATCTTAATACACCAGTATAACTGTAACATCCAGTATGGAAACATCTACAGCAACGCTTCATGGGGAGACACGGACACAAATACTGTTCAACTCAAAAGCACCTCcaggtgaaaggaaaaacaaacaacacacacacacacacacacacgttgcaAAATAATGCTCAGTGTTCTGGTACCTGACTTTACCAAGCAGTTTGAGCTGTGTTGTTATATTCTGG
>TU384897
tattttttatagttagTTTCTTTTGAACTGTGTGACAGTAGCACTTTCCGCACTTAACATTAAACCGTTGATCTTAATACACCAGTATAACTGTAACATCCAGTATGGAAACATCTACAGCAACGCTTCATGGGGAGACACGGACACAAATACTGTTCAACTCAAAAGCACCTCcaggtgaaaggaaaaacaaacacacacacacacacacgcgcgcacacacacacacacacacatcactacgcAGACTAGCTAGTCTTGTAGAGAGTTTGTGGGATGCTAGTGCTTCAGCTATGACTCTTAAGTGCATGTAAAAGAAGGAATGCGGTTCTCGTCTGGGTTCCTCAGCCGGACATTTACTCCTTGGAGTGCATGTACTTTAAGAGGTCGGCGACGCGGTGGCTGTAACCAAACTCGTTATCATACCTGtaacaaaaaacagataaaaaaactCCACATTGTTATCCTGTtatgacagggtgatgtgacGACACACAGCTGAGGATTTTCCTTCAACTGCACGTacggaagtgttttattcctcttataccacaacaacttaccaacagttacatttttttagttattaaagagtgacatattgtgcattttatccatttacggttacatttaatgtctcctaagttatagctgctatgaacagcttctcttttttctctctctctctctctctctaacactgacactggagactccttccataaatgtcactaaaataaacttctccttacagaaacgtTACCATATGAACAAGTCCCCGTaaaggagctgttactatagaaacgataacgtatcagaacaagcgcattaatgtTGATATAAACtggtgatttgtagctgcactactttcagagctgctgttatagaaaatgaatcaacaccttctgaccaatcagagtccagaattcggTAGCGCTGTGCGTTAACGGTGTGTTCGCTTGCTTGCTAACTTACCAGGAAATGAGTTTGACAAAGTTGTCGTTGAGGGAAATGCCGGCACCGGCATCAAAGATGGAGGAGTGGGTGTCACCAACGAAGTCAGAGGACACAaAGACTCCTCTGTGTATCCCAGAATTCCCTTCAGGGATCCATGGGAAGCCTTCTTGACGGCCTCCTTGATGTCAGCGTAGCTGGCGGGGGTTGAGAGGCGGCAGGTGAGATCCACCACGGAGACGTCGGCCACGGGGACGCGGAACGCCATGCCGGTCAGCTTCCTGCAGcgaaacaggaaaaatgttcTCATGTCTGTTCTGGTTAAGGAATAGCAGAGCGAAAACTCTACGTCTGTGTTCCTCCTGCTGACCCGTTGAGCTCTGGGATGACTTTGCCCACAGCCTTGGCAGCTCCTGTGGAGGCGGGGATGATGTTCTGGTGAGCGCCGCGGCCGTCGCGCCAGGCCTTGGCAGAGGGACCGTCCACCGTCTTCTGGGTGGCAGTGTAGGCATGGACTGTTGTCTGTGAGACAGAGCGAGACGGCAAAGAAGTGTAAAAGGCTTAAAGGTGCAAtggtccatgtttttttttatttcttacttgtacaaataaccagGAAAATACATAgaacatggttaaaaaaaaaaaaaactaaaggtTTAACATCACAGCctcagaaaacctgtttggagAACTCATAGAGTAATGCACAAATCATATGGGTTAAAacgaattttttaaaaaatgttaaataatatctAAAGCTACAGAAATGATCCTTACCATCAGAGCCTCCTCGATACCAAAGCTGTCATGGATGACTTTGGCCAAAGGAGCCAAGCAGTTAGTTGTGCAGGATGCATTGCTGTCAGATACACCACCAGGCATCCGGGTTATTcattattagtttttattattattattattattattataaaaaaattcaaataacatGCACAAAACTGAAAAAGTCTAGTATTCAGTAATCATGTGATTCAGAAACACGGTTTCTCTTATTAGTTAAACGTGCAGTCAAGCTGATGCTGGGTTGCACCAAGAAGAAGTTGAAGTTTGAATACGGattatgaaatttaaaattaattctaaGTATACGCCATGACAGATCCAGTATGTTGTAAACAAGTtgtaaacaagcaaacaacaacaacaacaacaacaacaacatgccTGCATATCAATTCTCTCTTTACCAGTTTACAATTCTGTGCAATTGGATTAATGAGTAaactttaataattaataatccaGGTTATTCCCTGTTGGTGCAATCCCAGgtttttaataagttttttttaaaaatttgaagTTTAGAGCGCTAAACTCACCTGACGATGGTCATGCTGGAGGGGTCGTACTTGTCCTCGTTGACTCCCATCACAAACATGGGGGCGTCGGGAGAGGGGGCGGAGACTACCACGCGCTTGGCTCCGCCCTGCAAGTGAGCCTgtagagaacacacacacacacacacacacacacacacacacaaaacgtgACTCAAGGTGAAGCAATTCAGTTTGCTAAGAATGATTTCTTGCTGTGATGTGGGTGGATGAGACTTACAGAGGCTTTCTCGATGCTGAGGAAGACTCCGGTGGACTCGACGACGTACAGAGCGCCGGCGTCGCCCCATGGGATCTCAGCGGGCTTCATACTGGAAAACGGAGATAGCCTGGCCGTCGACGATGAGCTTGCCGTCCTCGTGACGCACCTCTCCCTTGTAGCGTCCGTGGGTGGAGTCGTACTTGAACATGTAGACCTGTAGAAGAACAAACGTGTTTCAACACCGTGACCTCTACGACCTTCGCTCACACACTAACGAACGACGAGGTCAGGAGGTCAAACCTCACCATGTACTGCAGGTCAATGAAGGGGTCGTTGATGGCCGTCACTTTAATTCCTTTCTGCAGGCAGGCCCTGAGGACCAGACGGCCGATGCGGCCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384893 False 235 lncRNA 0.40 2 1593478 1612170
TU384895 False 1285 lncRNA 0.34 2 1592483 1619873
TU384897 True 2921 lncRNA 0.45 3 1593478 1597429

Neighbor

gene id symbol gene type direction distance location
si:ch211-269k10.4 NA coding upstream 107954 1481899 ~ 1484529 (+)
ptpn23a ptpn23,ptpn23a coding upstream 281769 1296876 ~ 1310714 (+)
LOC113541446 LOC108256266 coding upstream 405122 1185520 ~ 1187361 (+)
LOC117595784 LOC108256266,LOC108256164 coding upstream 425525 1138279 ~ 1166958 (+)
LOC113525078 LOC108256274,LOC108256268,LOC108256164 coding upstream 468302 1103739 ~ 1124181 (+)
LOC113532957 LOC108256297 coding downstream 88559 1708432 ~ 1713392 (+)
dnase2 LOC108256294 coding downstream 104258 1724131 ~ 1734131 (+)
phf1 phf1,LOC108256128,LOC108433894,LOC107592148,LOC107592451,LOC107665654,LOC107726675 coding downstream 150955 1770828 ~ 1788284 (+)
syngap1b LOC108256109,LOC108433893,LOC107592452,LOC107726670,LOC101464846,LOC102194363,LOC103477581 coding downstream 176482 1796355 ~ 1898390 (+)
paqr6 paqr6,LOC106605285 coding downstream 305709 1925582 ~ 1943290 (+)
G324382 NA non-coding upstream 129296 1461539 ~ 1463187 (+)
G324326 NA non-coding upstream 133158 1456477 ~ 1459325 (+)
G324360 NA non-coding upstream 163325 1428796 ~ 1429158 (+)
G324328 NA non-coding upstream 213543 1378546 ~ 1378940 (+)
G324303 NA non-coding upstream 223844 1339528 ~ 1368639 (+)
G324830 NA non-coding downstream 30164 1650037 ~ 1650938 (+)
G324832 NA non-coding downstream 32798 1652671 ~ 1653590 (+)
G324831 NA non-coding downstream 35255 1655128 ~ 1655861 (+)
G324842 NA non-coding downstream 47687 1667560 ~ 1667843 (+)
G324889 NA non-coding downstream 115746 1735619 ~ 1739255 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other upstream 428869 1118268 ~ 1163614 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other upstream 582260 956584 ~ 1010223 (+)
psmc4 psmc4,LOC107719110 other upstream 785955 774289 ~ 806528 (+)
G324206 NA other upstream 844008 745673 ~ 748475 (+)
G324161 fbl,LOC107719117,LOC107666874,LOC107737817,LOC107686016,LOC107600489 other upstream 982474 607612 ~ 610009 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other downstream 279753 1899626 ~ 1919710 (+)
bola1 bola1,LOC107592543 other downstream 522319 2142192 ~ 2144525 (+)
LOC113533074 LOC108256184 other downstream 584973 2204846 ~ 2215410 (+)
G325435 NA other downstream 945827 2565700 ~ 2569739 (+)
hamp NA other downstream 2391507 4011380 ~ 4013538 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G114479 NA non-coding NC_056714.1 CM032083.1 19379415 ~ 19452882 (-)