rxrab (LOC108255946,LOC108423686,LOC103046247,LOC107660328,LOC107672569,LOC107552637,LOC107740802,LOC107731035)


Basic Information

Item Value
gene id rxrab
gene name LOC108255946,LOC108423686,LOC103046247,LOC107660328,LOC107672569,LOC107552637,LOC107740802,LOC107731035
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 6281694 ~ 6327828 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939820.2
TCCGGTTAAAGCGCGCGCTGACAGCGGAGttcacacgcacgcacacacgcacgcacacgcacacacttgcCGTGATTCCTGCTGGATCTTTATTGCCAACTCGACGAAAGCTCCGGAGTAGCAGAGTGTCGTTTGTCCACTGCAGCTGGCATGAGCTAACATGGAAACCAAACCTTTCTTGTCGCTAGGGTTCCTGAAAAGCCCGTGCTCAGTAGCGCCGCCCTGTGTGCAGGGCCGGCCGGGCGATGCTGGCAGCTCGCCCTCGGGCTGCTCCTGCTTCACGGGCACATGCCCACTGCACCAGCGCAGGATATCCACAgACTCATCAGGCCAGCTGTCCTCGTCTCCTCTGAGCTCCCCGACTGGTCACCGTGCTGTTGGCCCTCATCCACTCCACCCGTCCCTGCTCACCCCGTCTTCCATGGGCTCAACACCGGGTCAGCTTCACTCACCCATCAATGGCCTAGCATCTCCCTTCCCTGTCATCAACTCACATATGGGCCATCCCTCCATCACAGGGCCTTCCAGCACCAGTATGGCCTTCGGCCCTAATCTCAGTCCACAActcAGCTCCCCCATGACGTCAGTCAGCAGCCCGGAAGACATCAAACCTCCTCTGGGCCTGAACGGAGTCATGAAGGTTCCAGCTCAGCCGACCGGCACCTCGTTGTCTCTCACCAAACACATCTGTGCCATCTGCGGCGATCGATCTTCAGGTAAACACTACGGCGTGTACAGCTGCGAAGGCTGCAAAGGCTTCTTCAAGCGCACGGTGAGGAAAGACCTGACTTACACCTGCCGAGACACCAAGGACTGTCCGATCGACAAGCGCCAGCGCAACCGCTGCCAGTACTGCCGCTACCAGAAGTGTCTGGCCATGGGCATGAAGAGAGAAGCTGTCCAGGAGGAGCGGCAGCGGGCGAGAGAAAAGAGTGAAGCTGAATTGGAGCTGGCGGGCTGTACCAGTGAAGAGATGCCAGTGGAGAAGATTCTGGAAGCTGAGCTGGCAGTGGAGCCCAAAACCGAAACCTATGTGGAAGGCAGCGTTGGTGCGGCTGCCAACTCTCCCAACGACCCCGTTACAAATATTTGCCAAGCTGCTGATAAGCAGCTCTTCACATTAGTGGAATGGGCAAAGAGGATACCACACTTTTCCGACCTGCCTTTGGATGACCAGGTCATTCTTTTACGAGCAGGGTGGAACGAGCTCCTCATCGCTTCTTTCTCACACCGCTCGATAAGTGTGAAAGATGGCATATTGTTAGCAACAGGCCTCCATGTCCATAGAAACAGTGCACATAGCGCTGGAGTAGGTGCCATTTTTGATAGAGTGCTGACAGAGCTGGTGTCTAAGATGCGAGACATGCAGATGGACAAGTCTGAGCTTGGATGCCTACGAGCTATTGTACTTTTCAATCCAGACTCTAAAGGTCTATCTAATCCAACAGAGGTGGAGGCACTTAGAGAGAGAGTATACGCTTCACTGGAGGCCTACTGTAAACAGAAATACCCCGATCAGCCTGggagATTTGCTAAACTGCTACTCCGACTGCCTGCTCTGCGCTCCATCGGTCTGAAGTGTCTGGAGCACCTCTTTTTCTTCAAACTCATTGGAGACACACCCATTGACACTTTTCTAATGGAAATGCTAGAGGCACCACACCAAATGACATAATGGAGCAGTGCCTTAACACAATGTCATGACAATGTCACTCAGAATTCCTGTAAAGAACACTGCAGTTTCATGCACACATCACCTTCAGGAGGCCATGATGAGATGCATTTATCTGCTAAACGTCTTCTCTTGCAATCCAGGAGACAAACAGATTAGCTTTGGTGCTTCATCTTTGGAATTTGCAAATCCATACAATTACACAAAGACCATTCACTATGGAGTAATTCATAAGGAGGATGGATTAAAAGAGTCATAACCGTATGCTTGGGAAGAAAGCTGGCACAGATTTTAGCAGATCTCGTGGTCAAAATGATTTCTTAAATATTCTGCCTCACAGTGACCTACCTCTGCAGTCCACTCTGTTCACAATGTCTCTGCTCAGTTTCATATCTGTACACATTCAGgtcagtgtgagtgtatagGTTTCATGAACGGATGCAAAATTCTGCAATACCTCATTAACACCCCTCGGTACCACAGGACTCCTTTTTCTGACACCTCATCACTGCCTTTGTTATGGACTGTACTTTATGTACTATAATATTCAACATcaattttgctatttttttttttaatattttaaaattcactgaTGAGAGAAGGATGTATAAGAAAGAAATGGTTGTATTTGCAGCACTTaactgattttaatttaatttgtttttttcaaacagTGTTGAAAGTAGCGAGGCTGCCAGCAGTCGGTCTTTGCATGGAGCAGTGTTGTTTGCCTGTAGCAGAGGCGTATGAATGACAGAATGGTCTAAAATGAATGTCACATGTGCTCTTTGCCTGACTCAAGTTTAATGATAGAAAAAAGCAATATGATTCTctaatgtttgtgtaaaatttTAGATGTTTGATTATCAATTGTTTTGCCTTTATAATTCATCTCATTAATGTATCAAGtatttccaaaatttttcatttaaatgtcatGTGATGATTCCCAGCAAAGCAGCATTTGTGCTATGAAAATATGCAGTTAGGCTACGTTCACattaaaaggctttttttttttcttgcctaaATGAGACACAGTcttctcaattctgatttgGGACACTAATATGTGGTACTAGATACATAGCCATGTAATTATATGAAAACGTATGAGGGGGTCATATTCACCTAGTGCTGGTAGCCTGTTAGCAGTGCTACCTAGGAGAAGGTAATGGAGAAATGACAGTAACAGCTGAAAAACCATCAAAAACCATCtggacttttttattttcatttagtcATATAACTGCTACTGAGCTGTCTGCCTCGAGAGCAAATCTCTGTAATGACAGATTGTGCTACAATTTCATTACTACAGTCTCTCAAATGTTTCTTGTTGTTCATGACACTTCATCATGCAGGTGGTGTTATTGATTTCAAAATAGGTTCATGTAAGTCATTTCAGGGCAGAGGTCTGAGGTCACATAAACACGAATGTGACCTGttaagacagaaagagagaggttaGTCTGCCACCTGGTGTTCACAGGTGATACTACAGCTTTcacaatatattatttaaaaaaaaaaaa
>XM_026939821.2
TCCGGTTAAAGCGCGCGCTGACAGCGGAGttcacacgcacgcacacacgcacgcacacgcacacacttgcCGTGATTCCTGCTGGATCTTTATTGCCAACTCGACGAAAGCTCCGGAGTAGCAGAGTGTCGTTTGTCCACTGCAGCTGGCATGAGCTAACATGGAAACCAAACCTTTCTTGTCGCTAGACTCATCAGGCCAGCTGTCCTCGTCTCCTCTGAGCTCCCCGACTGGTCACCGTGCTGTTGGCCCTCATCCACTCCACCCGTCCCTGCTCACCCCGTCTTCCATGGGCTCAACACCGGGTCAGCTTCACTCACCCATCAATGGCCTAGCATCTCCCTTCCCTGTCATCAACTCACATATGGGCCATCCCTCCATCACAGGGCCTTCCAGCACCAGTATGGCCTTCGGCCCTAATCTCAGTCCACAActcAGCTCCCCCATGACGTCAGTCAGCAGCCCGGAAGACATCAAACCTCCTCTGGGCCTGAACGGAGTCATGAAGGTTCCAGCTCAGCCGACCGGCACCTCGTTGTCTCTCACCAAACACATCTGTGCCATCTGCGGCGATCGATCTTCAGGTAAACACTACGGCGTGTACAGCTGCGAAGGCTGCAAAGGCTTCTTCAAGCGCACGGTGAGGAAAGACCTGACTTACACCTGCCGAGACACCAAGGACTGTCCGATCGACAAGCGCCAGCGCAACCGCTGCCAGTACTGCCGCTACCAGAAGTGTCTGGCCATGGGCATGAAGAGAGAAGCTGTCCAGGAGGAGCGGCAGCGGGCGAGAGAAAAGAGTGAAGCTGAATTGGAGCTGGCGGGCTGTACCAGTGAAGAGATGCCAGTGGAGAAGATTCTGGAAGCTGAGCTGGCAGTGGAGCCCAAAACCGAAACCTATGTGGAAGGCAGCGTTGGTGCGGCTGCCAACTCTCCCAACGACCCCGTTACAAATATTTGCCAAGCTGCTGATAAGCAGCTCTTCACATTAGTGGAATGGGCAAAGAGGATACCACACTTTTCCGACCTGCCTTTGGATGACCAGGTCATTCTTTTACGAGCAGGGTGGAACGAGCTCCTCATCGCTTCTTTCTCACACCGCTCGATAAGTGTGAAAGATGGCATATTGTTAGCAACAGGCCTCCATGTCCATAGAAACAGTGCACATAGCGCTGGAGTAGGTGCCATTTTTGATAGAGTGCTGACAGAGCTGGTGTCTAAGATGCGAGACATGCAGATGGACAAGTCTGAGCTTGGATGCCTACGAGCTATTGTACTTTTCAATCCAGACTCTAAAGGTCTATCTAATCCAACAGAGGTGGAGGCACTTAGAGAGAGAGTATACGCTTCACTGGAGGCCTACTGTAAACAGAAATACCCCGATCAGCCTGggagATTTGCTAAACTGCTACTCCGACTGCCTGCTCTGCGCTCCATCGGTCTGAAGTGTCTGGAGCACCTCTTTTTCTTCAAACTCATTGGAGACACACCCATTGACACTTTTCTAATGGAAATGCTAGAGGCACCACACCAAATGACATAATGGAGCAGTGCCTTAACACAATGTCATGACAATGTCACTCAGAATTCCTGTAAAGAACACTGCAGTTTCATGCACACATCACCTTCAGGAGGCCATGATGAGATGCATTTATCTGCTAAACGTCTTCTCTTGCAATCCAGGAGACAAACAGATTAGCTTTGGTGCTTCATCTTTGGAATTTGCAAATCCATACAATTACACAAAGACCATTCACTATGGAGTAATTCATAAGGAGGATGGATTAAAAGAGTCATAACCGTATGCTTGGGAAGAAAGCTGGCACAGATTTTAGCAGATCTCGTGGTCAAAATGATTTCTTAAATATTCTGCCTCACAGTGACCTACCTCTGCAGTCCACTCTGTTCACAATGTCTCTGCTCAGTTTCATATCTGTACACATTCAGgtcagtgtgagtgtatagGTTTCATGAACGGATGCAAAATTCTGCAATACCTCATTAACACCCCTCGGTACCACAGGACTCCTTTTTCTGACACCTCATCACTGCCTTTGTTATGGACTGTACTTTATGTACTATAATATTCAACATcaattttgctatttttttttttaatattttaaaattcactgaTGAGAGAAGGATGTATAAGAAAGAAATGGTTGTATTTGCAGCACTTaactgattttaatttaatttgtttttttcaaacagTGTTGAAAGTAGCGAGGCTGCCAGCAGTCGGTCTTTGCATGGAGCAGTGTTGTTTGCCTGTAGCAGAGGCGTATGAATGACAGAATGGTCTAAAATGAATGTCACATGTGCTCTTTGCCTGACTCAAGTTTAATGATAGAAAAAAGCAATATGATTCTctaatgtttgtgtaaaatttTAGATGTTTGATTATCAATTGTTTTGCCTTTATAATTCATCTCATTAATGTATCAAGtatttccaaaatttttcatttaaatgtcatGTGATGATTCCCAGCAAAGCAGCATTTGTGCTATGAAAATATGCAGTTAGGCTACGTTCACattaaaaggctttttttttttcttgcctaaATGAGACACAGTcttctcaattctgatttgGGACACTAATATGTGGTACTAGATACATAGCCATGTAATTATATGAAAACGTATGAGGGGGTCATATTCACCTAGTGCTGGTAGCCTGTTAGCAGTGCTACCTAGGAGAAGGTAATGGAGAAATGACAGTAACAGCTGAAAAACCATCAAAAACCATCtggacttttttattttcatttagtcATATAACTGCTACTGAGCTGTCTGCCTCGAGAGCAAATCTCTGTAATGACAGATTGTGCTACAATTTCATTACTACAGTCTCTCAAATGTTTCTTGTTGTTCATGACACTTCATCATGCAGGTGGTGTTATTGATTTCAAAATAGGTTCATGTAAGTCATTTCAGGGCAGAGGTCTGAGGTCACATAAACACGAATGTGACCTGttaagacagaaagagagaggttaGTCTGCCACCTGGTGTTCACAGGTGATACTACAGCTTTcacaatatattatttaaaaaaaaaaaa
>XM_026939822.2
TCCGGTTAAAGCGCGCGCTGACAGCGGAGttcacacgcacgcacacacgcacgcacacgcacacacttgcCGTGATTCCTGCTGGATCTTTATTGCCAACTCGACGAAAGCTCCGGAGTAGCAGAGTGTCGTTTGTCCACTGCAGCTGGCATGAGCTAACATGGAAACCAAACCTTTCTTGTCGCTAGGGTTCCTGAAAAGCCCGTGCTCAGTAGCGCCGCCCTGTGTGCAGGGCCGGCCGGGCGATGCTGGCAGCTCGCCCTCGGGCTGCTCCTGCTTCACGGGCACATGCCCACTGCACCAGCGCAGGATATCCACAgACTCATCAGGCCAGCTGTCCTCGTCTCCTCTGAGCTCCCCGACTGGTCACCGTGCTGTTGGCCCTCATCCACTCCACCCGTCCCTGCTCACCCCGTCTTCCATGGGCTCAACACCGGGTCAGCTTCACTCACCCATCAATGGCCTAGCATCTCCCTTCCCTGTCATCAACTCACATATGGGCCATCCCTCCATCACAGGGCCTTCCAGCACCAGTATGGCCTTCGGCCCTAATCTCAGTCCACAActcAGCTCCCCCATGACGTCAGTCAGCAGCCCGGAAGACATCAAACCTCCTCTGGGCCTGAACGGAGTCATGAAGGTTCCAGCTCAGCCGACCGGCACCTCGTTGTCTCTCACCAAACACATCTGTGCCATCTGCGGCGATCGATCTTCAGGTAAACACTACGGCGTGTACAGCTGCGAAGGCTGCAAAGGCTTCTTCAAGCGCACGGTGAGGAAAGACCTGACTTACACCTGCCGAGACACCAAGGACTGTCCGATCGACAAGCGCCAGCGCAACCGCTGCCAGTACTGCCGCTACCAGAAGTGTCTGGCCATGGGCATGAAGAGAGAAGCTGTCCAGGAGGAGCGGCAGCGGGCGAGAGAAAAGAGTGAAGCTGAATTGGAGCTGGCGGGCTGTACCAGTGAAGAGATGCCAGTGGAGAAGATTCTGGAAGCTGAGCTGGCAGTGGAGCCCAAAACCGAAACCTATGTGGAAGGCAGCGTTGGTGCGGCTGCCAACTCTCCCAACGACCCCGTTACAAATATTTGCCAAGCTGCTGATAAGCAGCTCTTCACATTAGTGGAATGGGCAAAGAGGATACCACACTTTTCCGACCTGCCTTTGGATGACCAGGTCATTCTTTTACGAGCAGGGTGGAACGAGCTCCTCATCGCTTCTTTCTCACACCGCTCGATAAGTGTGAAAGATGGCATATTGTTAGCAACAGGCCTCCATGTCCATAGAAACAGTGCACATAGCGCTGGAGTAGGTGCCATTTTTGATAGGTTGGAAAGCCCTGTTCTGAGATATCAGACCGGACCTTTATGACCGATAGATTTACGACTGCCATAGATCATTATCTGTGAGTTTTTGAAAATGACTCTCCTAAGGACGTTACTCTGTGTATCGCTAGATTGATAGCACTTTTACATTAGGCCACATGGAAGTGTTATGTAGCTATGAGATCATGTTTCACTTTCCATATGAAATCTGTCAGTGccctttttaattaaatgttcagTTGGTTtagtgcaaagaaaaaaagccaTTGTATGTACCTTA
>XM_026939823.2
TCCGGTTAAAGCGCGCGCTGACAGCGGAGttcacacgcacgcacacacgcacgcacacgcacacacttgcCGTGATTCCTGCTGGATCTTTATTGCCAACTCGACGAAAGCTCCGGAGTAGCAGAGTGTCGTTTGTCCACTGCAGCTGGCATGAGCTAACATGGAAACCAAACCTTTCTTGTCGCTAGGGTTCCTGAAAAGCCCGTGCTCAGTAGCGCCGCCCTGTGTGCAGGGCCGGCCGGGCGATGCTGGCAGCTCGCCCTCGGGCTGCTCCTGCTTCACGGGCACATGCCCACTGCACCAGCGCAGGATATCCACAgACTCATCAGGCCAGCTGTCCTCGTCTCCTCTGAGCTCCCCGACTGGTCACCGTGCTGTTGGCCCTCATCCACTCCACCCGTCCCTGCTCACCCCGTCTTCCATGGGCTCAACACCGGGTCAGCTTCACTCACCCATCAATGGCCTAGCATCTCCCTTCCCTGTCATCAACTCACATATGGGCCATCCCTCCATCACAGGGCCTTCCAGCACCAGTATGGCCTTCGGCCCTAATCTCAGTCCACAActcAGCTCCCCCATGACGTCAGTCAGCAGCCCGGAAGACATCAAACCTCCTCTGGGCCTGAACGGAGTCATGAAGGTTCCAGCTCAGCCGACCGGCACCTCGTTGTCTCTCACCAAACACATCTGTGCCATCTGCGGCGATCGATCTTCAGGTAAACACTACGGCGTGTACAGCTGCGAAGGCTGCAAAGGCTTCTTCAAGCGCACGGTGAGGAAAGACCTGACTTACACCTGCCGAGACACCAAGGACTGTCCGATCGACAAGCGCCAGCGCAACCGCTGCCAGTACTGCCGCTACCAGAAGTGTCTGGCCATGGGCATGAAGAGAGAAGCTGTCCAGGAGGAGCGGCAGCGGGCGAGAGAAAAGAGTGAAGCTGAATTGGAGCTGGCGGGCTGTACCAGTGAAGAGATGCCAGTGGAGAAGATTCTGGAAGCTGAGCTGGCAGTGGAGCCCAAAACCGAAACCTATGTGGAAGGCAGCGTTGGTGCGGCTGCCAACTCTCCCAACGACCCCGTTACAAATATTTGCCAAGCTGCTGATAAGCAGCTCTTCACATTAGTGGAATGGGCAAAGAGGATACCACACTTTTCCGACCTGCCTTTGGATGACCAGGTCATTCTTTTACGAGCAGGGTGGAACGAGCTCCTCATCGCTTCTTTCTCACACCGCTCGATAAGTGTGAAAGATGGCATATTGTTAGCAACAGGCCTCCATGTCCATAGAAACAGTGCACATAGCGCTGGAGTAGGTGCCATTTTTGATAGGTTGGAAAGCCCTGTTCTGAGATATCAGACCGGACCTTTATGACCGATAGATTTACGACTGCCATAGATCATTATCTAGTGCTGACAGAGCTGGTGTCTAAGATGCGAGACATGCAGATGGACAAGTCTGAGCTTGGATGCCTACGAGCTATTGTACTTTTCAATCCA

Function

NR:

description
PREDICTED: retinoic acid receptor RXR-alpha-B isoform X1

GO: NA

KEGG:

id description
K14030 NR2B4, usp; nuclear receptor subfamily 2 group B member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939820.2 True 3210 mRNA 0.46 11 6281694 6327828
XM_026939821.2 False 3078 mRNA 0.45 10 6281694 6327828
XM_026939822.2 False 1606 mRNA 0.53 9 6284984 6327828
XM_026939823.2 False 1497 mRNA 0.55 10 6284746 6327828

Neighbor

gene id symbol gene type direction distance location
brd3b LOC108255802,LOC107665032,LOC107740804 coding downstream 14107 6250931 ~ 6267587 (-)
fam78aa fam78aa,LOC108255801,LOC108423592,LOC107740833,LOC107731022,LOC107552624 coding downstream 41882 6236120 ~ 6239812 (-)
LOC113542600 LOC108255798 coding downstream 51411 6218805 ~ 6230283 (-)
gpsm1a LOC108255912,LOC108423595,LOC107595532,LOC107665019 coding downstream 106059 6172304 ~ 6175635 (-)
ak5l ak5l,LOC108255392,LOC108423692,LOC107595531,LOC107731024,LOC107665022,LOC107740835 coding downstream 109538 6164767 ~ 6172156 (-)
lix1 lix1 coding upstream 115876 6443704 ~ 6452129 (-)
zbtb26 zbtb26,LOC103133383,LOC106934410,LOC106934416,LOC106930504,LOC103152387 coding upstream 148541 6476369 ~ 6479116 (-)
krt1-c5 LOC108255341,LOC108423676,LOC107740828,LOC106585415,LOC105014123 coding upstream 160659 6488487 ~ 6492858 (-)
LOC113542264 LOC107549184 coding upstream 180602 6508430 ~ 6515609 (-)
LOC117595918 NA coding upstream 184606 6512434 ~ 6514926 (-)
LOC117595975 NA non-coding downstream 339862 5938466 ~ 5941832 (-)
G350114 NA non-coding downstream 550974 5730462 ~ 5730720 (-)
LOC117595899 NA non-coding downstream 571220 5707923 ~ 5710474 (-)
G350090 NA non-coding downstream 590925 5690361 ~ 5690769 (-)
G350061 NA non-coding downstream 621379 5660100 ~ 5660315 (-)
LOC117595904 NA non-coding upstream 55276 6383104 ~ 6388571 (-)
G350664 NA non-coding upstream 367027 6694855 ~ 6695063 (-)
G350714 NA non-coding upstream 414565 6742393 ~ 6742602 (-)
LOC113537000 NA non-coding upstream 574465 6902293 ~ 6914343 (-)
G350906 NA non-coding upstream 759886 7087714 ~ 7088036 (-)
pappab LOC108255326,LOC108423596 other downstream 160735 6056981 ~ 6120959 (-)
LOC117595919 NA other downstream 702713 5575788 ~ 5578981 (-)
LOC113542328 hectd4 other downstream 758413 5362282 ~ 5523281 (-)
G349951 NA other downstream 917412 5321513 ~ 5364282 (-)
hip1rb hip1r,LOC108255864 other downstream 954142 5248648 ~ 5327552 (-)
LOC113542569 NA other upstream 18835 6346663 ~ 6352372 (-)
G350867 NA other upstream 437086 6764914 ~ 6775149 (-)
ccdc180 ccdc180 other upstream 1257644 7585472 ~ 7597962 (-)
card9 card9 other upstream 1275079 7602907 ~ 7607466 (-)
hint2 hint2,LOC102299676,LOC102195764,LOC102781852,LOC104963271 other upstream 2225819 8553647 ~ 8556676 (-)

Expression


Co-expression Network