G368685


Basic Information

Item Value
gene id G368685
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 179182 ~ 184646 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU436777
ATTAAAGtctagagacagagacagacactcGTGGGTGCTCCTCAACTGGATTTCTTAATACAGTTATTACCTCTATGGTGAAGCTTTTACCAGCTGATGAAGCTGCCAGTGCACCGGCGGTGTTGTATCCTTGGAGGACGGTGTTGATGGAGTTGATTAAACTCGACTTTCCTGCTCCGATTGGGCCGTGAAGCAGAATCTTCAGCTCACGGACTTCTGCAGTGCCTGGCTGGAAATCCTTCAGTTTCCTCAACATCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU436777 True 258 lncRNA 0.48 2 179182 184646

Neighbor

gene id symbol gene type direction distance location
rnf175 rnf175,LOC107665971,LOC107692639,LOC107714147 coding downstream 17201 154481 ~ 161981 (-)
fgb fgb,LOC107758871 coding downstream 48821 125530 ~ 130361 (-)
LOC113524573 lratb,LOC108258974,LOC108439370,LOC107758869,LOC107590749,LOC106608435 coding downstream 65442 92135 ~ 113740 (-)
LOC113524574 LOC108258977 coding downstream 87162 83803 ~ 92020 (-)
lratb.2 LOC108258976 coding downstream 95392 78214 ~ 83790 (-)
pdia2 LOC108258683 coding upstream 43802 228448 ~ 234976 (-)
percc1 LOC108258685 coding upstream 50253 234899 ~ 244174 (-)
rgs11 rgs11 coding upstream 77507 262153 ~ 277683 (-)
elfn1b elfn1b,LOC108258545,LOC108439159,LOC107722936,LOC107590768,LOC107702506,LOC107714143 coding upstream 167807 352453 ~ 408289 (-)
uncx4.1 LOC108258667 coding upstream 333958 518604 ~ 525065 (-)
G368689 NA non-coding upstream 1188 185834 ~ 193914 (-)
G368713 NA non-coding upstream 59531 244177 ~ 244780 (-)
G368725 NA non-coding upstream 96793 281439 ~ 281903 (-)
G368903 NA non-coding upstream 393947 578593 ~ 581860 (-)
G368912 NA non-coding upstream 486994 671640 ~ 673030 (-)
si:dkeyp-75b4.8 NA other upstream 18008 202654 ~ 227102 (-)
pmm2 pmm2,LOC107692644,LOC101469678,LOC102299325,LOC100707130,LOC102200931,LOC107082664 other upstream 100217 284863 ~ 289908 (-)
rasd3 LOC108258668 other upstream 406490 591136 ~ 592595 (-)
prkcba prkcb other upstream 468807 653453 ~ 702345 (-)
zgc:77849 zgc:77849,LOC108258689,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708 other upstream 685113 869759 ~ 948803 (-)

Expression


Co-expression Network