G373714


Basic Information

Item Value
gene id G373714
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 10255003 ~ 10268661 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU442619
AATGGGGAAATTTTGCAAAAATAGATATCAAAAAGACAGGCCACGCTATCTAGCAGTCATGTCAGATATTCGGGGCCAAATATTAACAACTGACGCGATCCTAAAGCTATGCAGAGGATATGAAAGAAGTTAAAGATAGGTATAAAAGACAAAAACGTGGGACATATACTGTAAGTAATAAGAGAATAATTTATACCACAttcagaaaagaagaaacaaattGTTTTGCTCCCTGTGATAATGACAGACCATCTTGATGGgataaattaaatttctttgccttctttattttgtcctgTAGACCTAATCTATCTGCAAAACCAGCTCTCAGAGACACAAATGGCTTATTGTGTTTCCAGTTTACCTTGTACCATTATGCCTGGAACTGTGAATACATTCAGACGGGTTGTTCTGGTCTCTTTAGGAACAAAGGCTGAATCCAAGCATGTTTATGACGCTGGCAATGAGGACAAGTGCAAATTAGTCAGGGTGCTCTTTGGACAGATGGACATAGTGAATGTGAcctgtggcttttttttccccaccgtCTAATAACTCTGCTTCTTTAAGGACTTTTTCCAGACATTAGTATCTGTCTTTATTCCCCCTATTGTGCTGAAAAGATTAATGGAATGTAAAGAGACAGGTCAGGACAAGCAAACATGACAACTTGTTGAGCAAAAGCTACAAGGTTTATTGCACTAACAAACCCAAATATTCACAATCTACGACAATCCAAGAATGTCAGTGGGGGTGTAAGAAGACATTTGACCCACATGCTACCAAGATACAGATAACAGCGTAAGCTCAAAGAAGCCCAGTTTTTCAAGCAGCAATTTGAGGTCAGATCTCAAAAATGTTTGTGATACACTCTGTAAAAGATTCAGACCCAACTGGGGGATCTTTTGGGAGCTGAGAGTCCATTGTGATCCTGTAGTCAGATATGTTCTTGAACAATAAGTGTACTGTAATAGGGTTAGCTTTCATTACCTCAGCAGCTAATAAGGATTATCACTGACGTTTAGGTCATGTTTCTTAGACCATGTGGCTGTTCAAAGCTCTGTATTGACTGATCACCTGATTTCAGCATCTACACAGTGAACACAtccataaaaaacaaaagacaaactcaCTCAGGGAATCTTACGACCGcaggacacatttattttatgaaggTGGTTCAACTGTTTAAATATTAGGTACATTCAACGAATATTTACGCTCATATTTATGAGCCATTAGAGCTTTTTGTTCCTACATTTTTCTACTCACAGACACTAAGGCTTTTGTTAAAATCTATATTTGAAACATATCAtaaaaacagcacttttttttttacaacatgcATCTGAATTTAGCTTATTGCTCTTTAGATTAGAAATGAacaatttctatatttttatatatgtattttgttATGTTCTTTCAACCATTTTGAACTCAGTCACCTAAGATTATAACTGTAATGACTGTCACTGGGGCTTCACCGATCCAATGTATTCGATTTTCTATATGATAACGAGATTAGAGCTGTAGGTGTCGGTTgtcatgcaatatttttttttatcaatacCGACATCCGACATCCTCTTAGTAACTGAGCCAAATCTCTGCAAGGTTCCATCACCAAGCAATGCAAAACATCAGAGGCACAGTGATGGTGTGCTTTAGGATAAGCTGTGTGAAATACGTGTTGTGTCAGGCAGCATCACTCACATTCACCTCACAAAATGTGTCAGTAGGTCAGAtcagaaaatgtgtaaaattcaaTCCCGCAGTGAGCCAGTGTTTCAGACCAGTATCACCCTGACACCAGTACTCAGTAACAGATGGGTACATTCCTAATTACAACAAATGATCAGAGTTGATAGTGATCTCCACCGCCATTgtcatcaaataaataaaacaacagaccACATGAAGTCTGCACCCTACTCTGAGAAACACAGACTTAGAAAACCATGTGAGCTACAAAGAAatagattaaagaaaaaaagtcaaacatgGTCAGGACACACTGATAGTGAGATTTTGACCTCTGAggattaagtgtgtgtttgtagcatGAAGCTATATGGCAGACAGTGACACAGTGCACTTCATACAGATATCTACAGagtaattaaaggaaaactccaccctgaatgacttgcatatcaaTACTAAAGATCAATACGTGTTCTTCAGTGGTGCAAAAGATTGATTTTCTGATTAGACTTTTCTGTTTAAACTTCTTTaaacatgttggtctattttgaTTAATAGTTTCCAATGTTGTTCGATAGTGTACCTGCTGATATTGGTAGCAGTGAGATCTAGCATTTACTTCATCCCTActtaaagaaaaatgcatctgtccagctctctcacttcgTCTGTTTAAACACAAAGCTTCATCTTTCATCGTAATGCTGTTGCATGCTCGTAGATCACTAACCACCTGAGCCAAACCTCTGGCGTAACTCGGCAGTACTGCGTCATAAAGCCGCACCGCATACTGGAACTTCGAGTCTGACGTTTCTCATTAATATGTTGAACAacgctggaaaatggtgagttaGGAGCTCACAGTGAAACCTGGCCATTATCCATTATGTCTGGgatcaattcatttttttctaattttttttttttttttttttaacaatataataGCTAGCCAAATGTTACATAGCTTGCTAGCTACTGGTTTACACAAGATAATAGTCAATACAGTAATTAGCTAGCAAACCTAGTTTAGCCTAACGTTAGCTAGCAAACGTGGCATTAGATTATTTCTTGTAAAATATTCTTTCTTGTAAATCTTTAAAACATGGAATGAAACAACAGCAGCATAGACATTTCTAAgaccatttaaaaataacatgttgAAATGCTAGTCCCACATTTCAAGCATGCAAACCTaaatgagaaattaaaaaaaaaaaaaatggtacatGACATCAAAGATTTTTTAAAGCATGTATTCatgcaataaaataacaatCGATGCATTTTCTCCCCTGAACATCCATGCAAGAGGGGCATACAAAGCTGGCCTACAGTTTATCACATAATACTTCATTGTGAAGATTTAATTGTAACACGATCTCCAGGAAACACATATCCCTTAAGGATGATGGCTTAATGATATGCTAATTAACGACGTCACTTTAGCTTGTTTCAGTCCTAACAGTTTCTCAGGTAAATTTGATTAAACAGGCATTCGACTGCTTCTTCAATGTGCAGGACAAACAGGGGTTTGAGATGAgtgcagagaaagagacatggtTAGAGAGTAAAATAGCTGAAAAGAgaactttttctctctctctcctctctttcatCACAGCATTctgcccttctctctctctctctctctctctctcagctcgtCGATGTGGCCGTACCCTGCTATTTCTCCCTCCGAATGAAATGTTGTGCTCTGTTCAAGATTTCTAAGGCAATGTCACATTACAGATCCAAAAATGTACAACATCTATACATTGTGCGATTGTGGCATAGGGAAgaggggaatgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgagtgtgtctgtctgtgtatatggAGTTTCTATAGAACAGTGGCTTCCATTACGATGGCTGGATCCTCGATGTCTGCTTTGCTCTGAATCATTCGTAGCTCTAGCTGGGCTGGGCTCGGTTTTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU442619 True 3673 lncRNA 0.38 3 10255003 10268661

Neighbor

gene id symbol gene type direction distance location
LOC113537761 LOC108258610 coding downstream 18845 10217608 ~ 10236158 (-)
cryzl1 cryzl1 coding downstream 113426 10133212 ~ 10141577 (-)
cbr1 cbr1,LOC108428204,LOC107746284 coding downstream 131030 10120542 ~ 10123973 (-)
morc3b LOC108258289 coding downstream 138031 10104532 ~ 10116972 (-)
bcl9 bcl9,LOC107676875,LOC107746285 coding downstream 211748 9993701 ~ 10043255 (-)
LOC113537273 kcnrg coding upstream 86565 10355226 ~ 10359434 (-)
arl11 arl11 coding upstream 129240 10397901 ~ 10399251 (-)
mcf2la mcf2l coding upstream 171287 10439948 ~ 10526876 (-)
tubgcp3 tubgcp3,LOC107692132,LOC107746265 coding upstream 260863 10529524 ~ 10561707 (-)
sox1b sox1,LOC107746263,LOC107567792,LOC105927502,LOC103140368,LOC107676867,LOC107692134,LOC107718482,LOC103479789 coding upstream 427797 10696458 ~ 10698691 (-)
G373678 NA non-coding downstream 8183 10191996 ~ 10246820 (-)
G373658 NA non-coding downstream 124946 10129832 ~ 10130057 (-)
G373657 setd4 non-coding downstream 125373 10128809 ~ 10129630 (-)
G373656 setd4 non-coding downstream 127114 10126825 ~ 10127889 (-)
G373649 NA non-coding downstream 170266 10084439 ~ 10084737 (-)
G373719 dleu7 non-coding upstream 19719 10288380 ~ 10289373 (-)
LOC113537663 NA non-coding upstream 21976 10290637 ~ 10292578 (-)
G373762 NA non-coding upstream 226975 10495636 ~ 10564924 (-)
LOC117596123 NA non-coding upstream 407971 10676632 ~ 10797197 (-)
G374040 NA non-coding upstream 659806 10928467 ~ 10929554 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 336224 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 1644162 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 1822565 8429562 ~ 8432438 (-)
timmdc1 timmdc1 other downstream 1925977 8320868 ~ 8329026 (-)
LOC113537489 NA other downstream 1987731 8261435 ~ 8267272 (-)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 153491 10422152 ~ 10435367 (-)
lipt1 lipt1 other upstream 602563 10871224 ~ 10872556 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 1810230 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 2356390 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 3039052 13307713 ~ 13320530 (-)

Expression


Co-expression Network