lipt1 (lipt1)


Basic Information

Item Value
gene id lipt1
gene name lipt1
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 10871224 ~ 10872556 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU442843
CGCCCCTATGAGTAGATAAACTCCAGCCTGAGTGTGAAAGTGAATAAGCTTATTAAGATACACAGAAGTTTCGTCTCAGTCTGTGGAACAGTGGAACAGTGGAACAGATAATCAAGACTTTCAATCAAGAAAAGTTCAGAAATGATTCTGAGGACTTTGTCGCGGGTGTTCCTCAGGACACGTGACCTCAGCCGGCTCGCGCGACGCAAGAGCACTTTAAACTCGTGTTTTGATGAGAGCGGTAAAGCGGGTCTCATCCTCAAGTCTTCATCCACGGACATTTTCCAAAACCTGGCTCTGGAGGACTGGATACATGAAGCGTGTCGATGTGCAGAGCCGGAGCATCTTGTTGTTGTGGAGGAACGCTCCGGCGGTGGTGATCGGGAGGCACCAGAACCCCTGGCAGGAGTGTGACGTGCAGCTGCTGAGGCGGACGGGAATCCCGGTGGCCAGGCGGCGGAGCGGCGGCGGAACCGTGTACCACGATCTGGGCAACATAAACATGACTTTCTTCACCTCGAAGAAGAAATACGACCGCATGAGGAACCTCGGGGTCGTGACCGGGGCTGTGAAGGCGCTCAGGCCGAATCTGGATGTCTGTGCTACAGAGAGGTTTGACATTATACTTAACGGGTGTTATAAAATCTCCGGGACTGCAGCCAGGCTGGGAAGGACAGCCGCCTACCATCACTGCACCCTGCTGTGTTCCGCAGATCGCTCTGTCCTCTCATCAGTCCTGAAAAGCTCATGCACTGGCATTAAAAGCAACGCCACCCCCAGTGTGCCTTCCCCTGTCACAAATCTGTCAGACCACCACCCCTCTCTGAACCCCGAGTCCCTTATGGACGCCATCGCGTCTCGTTATAATAAAGAGTTTGACTTTGACAGTCCTGTCCTCACGGTCGACCCAGGATCAGAAGTGCTAATGCCTGGCATTCAAAAGATGACCTCTGATCTGAGAAAGTGGGACTGGGTTTATGGAAAGACCCCAAAATTCAGCATTTGCACAACTTTTGTGGTGGAGAACACTAACGTTGGACTGGAGATAGACATCAAGAATGGGGTTGTAGAAACATGTGTGATGGTTGTACCCCATGACTGGCTGCCTGCAGACTTCGTGAAAGAGTTCTGCTCCAGTTTGACAGGCGTCCGGTTCTGTCCGAATGAGTTCGCTGTGTCTGTAGCAGCTTTCCTGAGAACTACCTCATCTTCACCTCAGCATGCCCAAAACACACTCAGCCTCTATGAGAACATTGTATcagt
>XM_026932101.2
TCTGAGACTCCGCCCCTATGAGTAGATAAACTCCAGCCTGAGTGTGAAAGTGAATAAGCTTATTAAGATACACAGAAGTTTCGTCTCAGTCTGTGGAACAGTGGAACAGTGGAACAGATAATCAAGACTTTCAATCAAGAAAAGTTCAGAAATGATTCTGAGGACTTTGTCGCGGGTGTTCCTCAGGACACGTGACCTCAGCCGGCTCGCGCGACGCAAGAGCACTTTAAACTCGTGTTTTGATGAGAGCGGTAAAGCGGGTCTCATCCTCAAGTCTTCATCCACGGACATTTTCCAAAACCTGGCTCTGGAGGACTGGATACATAAGCGTGTCGATGTGCAGAGCCGGAGCATCTTGTTGTTGTGGAGGAACGCTCCGGCGGTGGTGATCGGGAGGCACCAGAACCCCTGGCAGGAGTGTGACGTGCAGCTGCTGAGGCGGACGGGAATCCCGGTGGCCAGGCGGCGGAGCGGCGGCGGAACCGTGTACCACGATCTGGGCAACATAAACATGACTTTCTTCACCTCGAAGAAGAAATACGACCGCATGAGGAACCTCGGGGTCGTGACCGGGGCTGTGAAGGCGCTCAGGCCGAATCTGGATGTCTGTGCTACAGAGAGGTTTGACATTATACTTAACGGGTGTTATAAAATCTCCGGGACTGCAGCCAGGCTGGGAAGGACAGCCGCCTACCATCACTGCACCCTGCTGTGTTCCGCAGATCGCTCTGTCCTCTCATCAGTCCTGAAAAGCTCATGCACTGGCATTAAAAGCAACGCCACCCCCAGTGTGCCTTCCCCTGTCACAAATCTGTCAGACCACCACCCCTCTCTGAACCCCGAGTCCCTTATGGACGCCATCGCGTCTCGTTATAATAAAGAGTTTGACTTTGACAGTCCTGTCCTCACGGTCGACCCAGGATCAGAAGTGCTAATGCCTGGCATTCAAAAGATGACCTCTGATCTGAGAAAGTGGGACTGGGTTTATGGAAAGACCCCAAAATTCAGCATTTGCACAACTTTTGTGGTGGAGAACACTAACGTTGGACTGGAGATAGACATCAAGAATGGGGTTGTAGAAACATGTGTGATGGTTGTACCCCATGACTGGCTGCCTGCAGACTTCGTGAAAGAGTTCTGCTCCAGTTTGACAGGCGTCCGGTTCTGTCCGAATGAGTTCGCTGTGTCTGTAGCAGCTTTCCTGAGAACTACCTCATCTTCACCTCAGCATGCCCAAAACACACTCAGCCTCTATGAGAACATTGTATcagtaatgtaaataaaataatgtaatataaaaataaaataatatttgagtTGTTGCACATGATG

Function

symbol description
lipt1 Predicted to enable lipoyltransferase activity. Predicted to be involved in protein lipoylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in mitochondrion. Orthologous to human LIPT1 (lipoyltransferase 1).

NR:

description
PREDICTED: lipoyltransferase 1, mitochondrial-like

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K10105 LIPT1; lipoyltransferase 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU442843 False 1263 TUCP 0.52 1 10871284 10872546
XM_026932101.2 True 1332 mRNA 0.50 2 10871224 10872556

Neighbor

gene id symbol gene type direction distance location
eif5b eif5b,LOC102778822 coding downstream 1128 10850376 ~ 10870096 (-)
arhgef7b arhgef7,arhgef7b,LOC107718510,LOC107567796,LOC107676887 coding downstream 32263 10806435 ~ 10838961 (-)
sox1b sox1,LOC107746263,LOC107567792,LOC105927502,LOC103140368,LOC107676867,LOC107692134,LOC107718482,LOC103479789 coding downstream 172533 10696458 ~ 10698691 (-)
tubgcp3 tubgcp3,LOC107692132,LOC107746265 coding downstream 309517 10529524 ~ 10561707 (-)
mcf2la mcf2l coding downstream 344348 10439948 ~ 10526876 (-)
map2k7 map2k7,LOC107712243,LOC107692141 coding upstream 61589 10934145 ~ 10946702 (-)
pkn1a LOC108428230,LOC107603033,LOC107712223,LOC107676851,LOC107561874 coding upstream 76522 10949078 ~ 10995765 (-)
si:ch211-214c7.4 prr36,LOC108258951 coding upstream 129111 11001667 ~ 11019985 (-)
mcoln1a mcoln1,mcoln1a,LOC108428233,LOC107561871,LOC107676888,LOC107718592,LOC107603030 coding upstream 152737 11025293 ~ 11046065 (-)
trappc5 trappc5,LOC107712234,LOC107692146,LOC107676838 coding upstream 174203 11046759 ~ 11052112 (-)
LOC117596123 NA non-coding downstream 74027 10676632 ~ 10797197 (-)
G373762 NA non-coding downstream 306300 10495636 ~ 10564924 (-)
LOC113537663 NA non-coding downstream 578646 10290637 ~ 10292578 (-)
G373719 dleu7 non-coding downstream 581851 10288380 ~ 10289373 (-)
G373714 NA non-coding downstream 602563 10255003 ~ 10268661 (-)
G374040 NA non-coding upstream 55911 10928467 ~ 10929554 (-)
G374039 NA non-coding upstream 57183 10929739 ~ 10933407 (-)
G374091 sept3 non-coding upstream 195175 11067731 ~ 11067952 (-)
G374093 atf7ip non-coding upstream 212086 11084642 ~ 11120831 (-)
G374105 NA non-coding upstream 266627 11139183 ~ 11139811 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 435857 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 952445 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 2260383 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 2438786 8429562 ~ 8432438 (-)
timmdc1 timmdc1 other downstream 2542198 8320868 ~ 8329026 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 1206335 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 1752495 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 2435157 13307713 ~ 13320530 (-)
G375428 NA other upstream 2566663 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 3099780 13972336 ~ 13980251 (-)

Expression


Co-expression Network