G374040


Basic Information

Item Value
gene id G374040
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 10928467 ~ 10929554 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU443009
tctttatttatgatttttacatattatatatatatataaatataaatatatattctgtaccatttttttccattgtgtttTTAGAAAAAGACACACTTTTGCTTTGTCTTCTTACCTTGTTTGAATCTATTTGCAATATGCCGTTTTTACTTTCGTCACGTGATTTCAGGCTGTTGTTGTCGTCATTGTCGTcgttgtttttatgtttgtagGTTTAAGATCATCGTCATGTTCGCATTCCTGCATAATATTTTGCGTGCGAGTGCAGGACAGATTGGGTTAGTTTTTATACGTTTAGAAAACCAAAACGTTTCTCACGGTTGCTATGTCGTAAGGTGAATATCTTCAGGGGTTAATCTCACACCAAATTGAACAAAGACATTTTGGTGTTCTGACAGAAGGCAGCGTATGCTGTTGTAGAGTTCGACTTCTTTCAGAAACATCATGTCAAAGgtgtgtctttttcttttgaagCCGAGCGACTCATTCGTCACCTGGTTTTTaccctgtaattttttttttattattatttttttttttttttaaaaacgtgtCTGTAGACAATGATGTTATCCCGTGTGTGTACTTGTTCTCTGGTCATTATTAGGTTCCTTCATGCTGTATAGAGTTAAATATCACCGTTCCGAGCTGCTGTTGCTTTCAGACTAATGGAATGtatcattttaatatcaaaatTTCCATCTGAATTCCAGCTCAGACTCAGATTCAGTCTGCTGTCTTCAGTAGGACGTGTCAGTGATCATCCCAAACCtgtatgatttatgattttttttttttttttgtgccaacaGCTGTAATTAGTCTGCTTAATTCTTCTGCTTTAGGAAAGTATGAGAATCGTCTGTCTGATGGGATTTACTTTGGTTTAACTTAACACACGTGCTGTAGTAAATAATAGAAATCTGAAATTTCACACAGCCCTGTTTATGGAACAAAAACCACCCCATTACAGCATTATTCATGCTTTTGTgtttctctccatttttttttttccatttatatcCCTTTTAGTCTCATTTCATCACTATTTCAAATGAATTCAATGCCATTATATTGTGAATACCTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU443009 True 1088 lncRNA 0.34 1 10928467 10929554

Neighbor

gene id symbol gene type direction distance location
eif5b eif5b,LOC102778822 coding downstream 58371 10850376 ~ 10870096 (-)
arhgef7b arhgef7,arhgef7b,LOC107718510,LOC107567796,LOC107676887 coding downstream 89506 10806435 ~ 10838961 (-)
sox1b sox1,LOC107746263,LOC107567792,LOC105927502,LOC103140368,LOC107676867,LOC107692134,LOC107718482,LOC103479789 coding downstream 229776 10696458 ~ 10698691 (-)
tubgcp3 tubgcp3,LOC107692132,LOC107746265 coding downstream 366760 10529524 ~ 10561707 (-)
mcf2la mcf2l coding downstream 401591 10439948 ~ 10526876 (-)
map2k7 map2k7,LOC107712243,LOC107692141 coding upstream 4591 10934145 ~ 10946702 (-)
pkn1a LOC108428230,LOC107603033,LOC107712223,LOC107676851,LOC107561874 coding upstream 19524 10949078 ~ 10995765 (-)
si:ch211-214c7.4 prr36,LOC108258951 coding upstream 72113 11001667 ~ 11019985 (-)
mcoln1a mcoln1,mcoln1a,LOC108428233,LOC107561871,LOC107676888,LOC107718592,LOC107603030 coding upstream 95739 11025293 ~ 11046065 (-)
trappc5 trappc5,LOC107712234,LOC107692146,LOC107676838 coding upstream 117205 11046759 ~ 11052112 (-)
LOC117596123 NA non-coding downstream 131270 10676632 ~ 10797197 (-)
G373762 NA non-coding downstream 363543 10495636 ~ 10564924 (-)
LOC113537663 NA non-coding downstream 635889 10290637 ~ 10292578 (-)
G373719 dleu7 non-coding downstream 639094 10288380 ~ 10289373 (-)
G373714 NA non-coding downstream 659806 10255003 ~ 10268661 (-)
G374039 NA non-coding upstream 185 10929739 ~ 10933407 (-)
G374091 sept3 non-coding upstream 138177 11067731 ~ 11067952 (-)
G374093 atf7ip non-coding upstream 155088 11084642 ~ 11120831 (-)
G374105 NA non-coding upstream 209629 11139183 ~ 11139811 (-)
G374111 NA non-coding upstream 217900 11147454 ~ 11147673 (-)
lipt1 lipt1 other downstream 55911 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 493100 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 1009688 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 2317626 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 2496029 8429562 ~ 8432438 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 1149337 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 1695497 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 2378159 13307713 ~ 13320530 (-)
G375428 NA other upstream 2509665 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 3042782 13972336 ~ 13980251 (-)

Expression


Co-expression Network