G374111


Basic Information

Item Value
gene id G374111
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11147454 ~ 11147673 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU443094
GTTGGGTTCGTGTCTGTTAAGGGTAAAGGGTGACTGCGCATGCTCGGTTTATATTTGTatgcgtgtctgtgtgtcattTGAGTATTTGTGTATGTCAGCGTGCTTACTGATGCCAATCTCTGCATGTTTCATTACTTCTGGAACTAATACAAGCATTTCCCCAGCAAACCCCGATCTCTGTTCTTCCTGGCAAAGCAATAAATTATGCATCAAACAAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU443094 True 220 lncRNA 0.42 1 11147454 11147673

Neighbor

gene id symbol gene type direction distance location
trappc5 trappc5,LOC107712234,LOC107692146,LOC107676838 coding downstream 95342 11046759 ~ 11052112 (-)
mcoln1a mcoln1,mcoln1a,LOC108428233,LOC107561871,LOC107676888,LOC107718592,LOC107603030 coding downstream 101389 11025293 ~ 11046065 (-)
si:ch211-214c7.4 prr36,LOC108258951 coding downstream 127469 11001667 ~ 11019985 (-)
pkn1a LOC108428230,LOC107603033,LOC107712223,LOC107676851,LOC107561874 coding downstream 151689 10949078 ~ 10995765 (-)
map2k7 map2k7,LOC107712243,LOC107692141 coding downstream 200752 10934145 ~ 10946702 (-)
si:ch211-243a20.3 NA coding upstream 100136 11247809 ~ 11258475 (-)
emp1 emp1,LOC108258510,LOC107718756,LOC107692152,LOC107603024,LOC107676894 coding upstream 127589 11275262 ~ 11280128 (-)
LOC113537574 LOC108258505,LOC108439141,LOC107376145,LOC106957017,LOC103468358,LOC106517844,LOC102204789,LOC106930820,LOC102799753,LOC101476653,LOC102083067 coding upstream 155110 11302783 ~ 11308486 (-)
si:ch211-239f4.1 evi5l,LOC108258486,LOC108428244,LOC107676895,LOC107718810,LOC107692153 coding upstream 165092 11312765 ~ 11352381 (-)
LOC113537567 LOC108258496,LOC108428189 coding upstream 213753 11361426 ~ 11370055 (-)
G374105 NA non-coding downstream 7643 11139183 ~ 11139811 (-)
G374093 atf7ip non-coding downstream 26623 11084642 ~ 11120831 (-)
G374091 sept3 non-coding downstream 79502 11067731 ~ 11067952 (-)
G374039 NA non-coding downstream 214047 10929739 ~ 10933407 (-)
G374040 NA non-coding downstream 217900 10928467 ~ 10929554 (-)
G374196 LOC108258482,LOC107676879,LOC107551907,LOC107603025,LOC107692185 non-coding upstream 89389 11237062 ~ 11237431 (-)
G374198 grin2b,grin2bb,LOC108258482,LOC107603025,LOC107551907,LOC107676879 non-coding upstream 90568 11238241 ~ 11242837 (-)
G374230 ddx39aa,ddx39ab,LOC100304672,LOC107603018,LOC107692155,LOC105901571 non-coding upstream 211170 11358843 ~ 11360421 (-)
G374370 NA non-coding upstream 446293 11593966 ~ 11594981 (-)
G374371 NA non-coding upstream 447519 11595192 ~ 11596239 (-)
lipt1 lipt1 other downstream 274898 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 712087 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 1228675 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 2536613 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 2715016 8429562 ~ 8432438 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 931218 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 1477378 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 2160040 13307713 ~ 13320530 (-)
G375428 NA other upstream 2291546 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 2824663 13972336 ~ 13980251 (-)

Expression


Co-expression Network