G374198 (grin2b,grin2bb,LOC108258482,LOC107603025,LOC107551907,LOC107676879)


Basic Information

Item Value
gene id G374198
gene name grin2b,grin2bb,LOC108258482,LOC107603025,LOC107551907,LOC107676879
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11238241 ~ 11242837 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU443184
ccttttatttattgtcaaCACTGTTTTGTACAAAGAGACAGAAGAATATATCTTAGCACTTATATTTCACACATACTGTGTCTGTATTCTCAATAGCTTAAGTATTGTGAAATTTCCcgttaaattattattgtaatctTAAACACAGGTAATCTCTCTCTATACAAAAATGGATTAAGAGAAACCATTTGGTCATATTTACACAATCTGTACATTTGTAATTTGtcagtaacatttaaaataagtgTCGAAAAAccaaggaaaaaagagaattaGAAATATCAATTTATATGAAAGACAACAAAGGCGTACGTTTTATCCTTTCAATATCAGGTCTACCATTGGTCACATGATCTTGGTATACTTCTATGGTGGTTATAAAACCTTCCTAACAAAAGTGTATGCCAAATTACCCCATCTGAGTATCTGTATCtccatatattaaaaattatggaAAAGGGGACGTATTTATTTACAGCAGAACTTCAACGCATGTGCAGTCCGTctcacacatacccacacacagaGGTAATCAAGCATGAATTCAGGCACATGTATTCTACAAATACCTGTGACATACAGTAGCAGAAGAGGGATTTGGGGAGCAAATGGAAAACAGGGACTGATAAGCCTACGCTCGATAACAATGTTGCACACTCTTTGTGCAACTGCCAACTCCCAAGAATCCTATACATGAGTGAAAATTATAACAGAgtgcaaaaatgaaatgtaggcTACTATCTTTCACTCTCTAATGTGTACACTCCTGCCATTGTCTCTCGTGATCTCCACCTACATGCAGCGAACAACTCTGCTATCACAGAGCCTCCAGTGAATTGGTGCGAGTCCAAACTATAGGCTACGTTACAGGAAGAACTGCAGCTGTTTCTTAGGAAGAGCAAAGGCGAACTCTGTTCCTTGCCAGCTCAAATTCgcacaaaaataaagaattttaaCCGGCATTCCATAGGACTAATAACCCCATAGCTTATGAGTTAGCCTGTGTGACTTCCTTTCTGATAGACGCTCTCTCTTCCactctcacccacacacagattttctctctcctgtgcTACCAAATCCATCCCACATAAAACATCAAGAGTGACAGAAGAAGTGGCCACACTGCATAATTGTACACCGAACCTGCAAAATATCTGTCATTTTTAGGAACACACTTGACTGAAGGAAAACTGTACcttcaataagaaaaaagaccacgcttaaaataaaaacacattttgccaaGGGTCAAACAtgcaaatatctttttttttttttttgcaatgataGGTTAAGATTTCAATCGCttacagtgaaaaaaattaGCCCTATGAACAcaagaatgaaaataaacttGTTCTCAAGTTAGAACCCTGCACACTGTAACATAAATTGTTCAGGCTGAGGACATGACAATGCTTTCTGTCAaacatccatatatatatatatgtccatTCTCATTAGCATATTCGCCCATCATGCCAGACCATACAGTTATCAGTCTGAACTCTGTGTGGCACTAACTGGTACAAGTTAAGCAAAAGAAAGACACATTTCTTTACacgaaaaagaaaaacactaaacatgGTCTTTGAATTATACATAATCTAAAAGCtggaatgcaaaatagaaagaaagatgcATGCATGTATCTCATAATGTACTCACGGTTTcacaaactctcacacacttagcaaaaaaatgaataagtgTGGCAATAAAAGTGGTGTTTTCTTAAAGACCACAAAATAGATATTTACACagcaattattaatataaacattgtgCTTGAATTGGAGATCTGTTTGGCTGAgagtattttttataaaatgtgaataaagaaaatgtatatttcacacacaaaacaaactcaTATAGAGCTATATAGGTATATGGGAAAAGAATAGGGTTTTAGGGACCACCAGCAAAGTTTATATGTTCATTGGTgggattaaaaaagtaaatatggCACAGACTAGTGATTATACCACTAAATGACCAAATTTACTGAttaatctatttaaataattggCTAGTTAGAAAGTTGACTAAGTGTAATTTTTGTCCAATCCATGTAATACTAGCCAAAAATACCTCAATTCTGCATGTAAGAAGTAATCCTGACTAGTTATAGACTATTGCTGGTTGTCCAAGAGTGGTTGGATTAATATACATAAATGATTAAgtctataacatttaatttgattagTAAGCTTCACTGCAACATATTTGACTtggaattaaaaacaaaaaaaaaaaacagaagggtGTTCTTGACAGAACAGCACTTATTTAACTGTTATATAAGCAAGAAAGATTATTCTGCCTCCCAGAGCTAGTCAGGGTGCCGTCTGTGAAAACACGTAGTGATAGTAAAGAAATAAGTAACATTTGTACTTATCATATTATAATTTTGATGTTCTCTGCAGTCATCATTTTTGGCCAGGTTGAATTGTGCAAATATtctaatttcatttcatatctAATTAAGTAAAACGCATTTCTAAACTTACATCTTTGCTGTATTCTCACTGTACACTATGGAAAAAAAGGATATTTACACTTATAAAATACAAGCAGATGCCATGGCAAAGCTCTTTCGTAATATCCTGTAACACCCATCTCATTCTTACCTAAGGGTGCacaaaaagaaagggaaaaaaattaattcaaaaccaagtgtggaaaaataattaattgattgatggTTGTTTGTCCAGTATTTGAACTAACATCCTGCAACTCAATTCAAATATATAAGACATCCCAGGTATTTCTCCTGTCTGATTTTTAAGTCTAATAAAtgcactaaataaatgaaagttgTTATCTATAGAACAGGTTTCACGCAGAGCTGTGCAAATTCAGTTCAAAACTAATTTTGTAAAACAATAATTCTGAATTCAAATCCGTGCTACACAATCATACAATTTATGATTGTGTTGTGTCTCTGCACGTAATTGGACATTGCAATTCCATATCAGGCGTCTTTATCACAAATAACGATCTAGAATCATGGATACTCATCCAATGACCAATCTGTGTGCAGTGACCAGAAAGATGCCATAACAACATGACCTGTATAATTAGAATTCTGGGACTCCTGCTAAGGCACATAATGTGCTGTGTACTAAACCAACGCTCTACTGACATGAATGCAACattataaaaattgtaaagCCATAAAAAGAGATCATAATAATTGTCCTTCAGCACAATATCTGGAGTACAACTTAAGTACTTTGCAAATCATGCCTTTTACATATAATTTTACAGCActcaataaatgaaataaacatgaataattaatagtaaataaagctgaaaggaaaacaagtttgtctacatttttttccagcttGGCATTGTCCCTGGCGGTCCTGGAGTTCCAGATCAGGGCAAAATGGCATGATGATGTAAGACAATGCAAGCTCAGTTGACAAATACGATCAAATGACAGCCCATGATGAAATAAGAATTCTCTGAAAAGTAGTATGCTAACAAAGAATTGTAAGCAGAGTACAAAGATATTACAGCATATAACATACAGAAATCAATCCCAAACTGAACATCATAAACATTATAATCATATCTAATAATATTAGTGTTAACATCATCAATACAATTATTGTAAGGTTTACCCTGTTGTTTCTAGACAATAACTGATTTCTCTTCACGATCGTACCAGGTCTCTGTACCTAAGCTGGATCGGACATTGTGTTTTGGTATAAGGAGCAGAAAAATAGAAGGgataataaaaagaagagagGATAAAATAGCGGGATATACTGAGGTTGTCACTATCTGGTCTGAGCTTTTGTCTTGTGAGCAGGTCCCTTCTCTCTATTTACAGTGATCCAACAGTGCTACGTCCACCTGTATCAAGCATTGATGAGTTCCTCTTGCTTGCTTTCTTGGTTTTGAAAGTGAAATTACAAAGTAGACACGATCTGTTGGTCATTACCTTAGTCTGCTGCCTCCTTGCTTTTGAAATACATTTCTCTCTttatgtttctctctttctgcctctttctctcacttgcACAtaaacatcagacatcagatTCAATGCTGGAGAGCTTCTCGTATACGTGTCCATTACTTGAGCCATTGAAAGG
>TU443185
ccttttatttattgtcaaCACTGTTTTGTACAAAGAGACAGAAGAATATATCTTAGCACTTATATTTCACACATACTGTGTCTGTATTCTCAATAGCTTAAGTATTGTGAAATTTCCcgttaaattattattgtaatctTAAACACAGGTAATCTCTCTCTATACAAAAATGGATTAAGAGAAACCATTTGGTCATATTTACACAATCTGTACATTTGTAATTTGtcagtaacatttaaaataagtgTCGAAAAAccaaggaaaaaagagaattaGAAATATCAATTTATATGAAAGACAACAAAGGCGTACGTTTTATCCTTTCAATATCAGGTCTACCATTGGTCACATGATCTTGGTATACTTCTATGGTGGTTATAAAACCTTCCTAACAAAAGTGTATGCCAAATTACCCCATCTGAGTATCTGTATCtccatatattaaaaattatggaAAAGGGGACGTATTTATTTACAGCAGAACTTCAACGCATGTGCAGTCCGTctcacacatacccacacacagaGGTAATCAAGCATGAATTCAGGCACATGTATTCTACAAATACCTGTGACATACAGTAGCAGAAGAGGGATTTGGGGAGCAAATGGAAAACAGGGACTGATAAGCCTACGCTCGATAACAATGTTGCACACTCTTTGTGCAACTGCCAACTCCCAAGAATCCTATACATGAGTGAAAATTATAACAGAgtgcaaaaatgaaatgtaggcTACTATCTTTCACTCTCTAATGTGTACACTCCTGCCATTGTCTCTCGTGATCTCCACCTACATGCAGCGAACAACTCTGCTATCACAGAGCCTCCAGTGAATTGGTGCGAGTCCAAACTATAGGCTACGTTACAGGAAGAACTGCAGCTGTTTCTTAGGAAGAGCAAAGGCGAACTCTGTTCCTTGCCAGCTCAAATTCgcacaaaaataaagaattttaaCCGGCATTCCATAGGACTAATAACCCCATAGCTTATGAGTTAGCCTGTGTGACTTCCTTTCTGATAGACGCTCTCTCTTCCactctcacccacacacagattttctctctcctgtgcTACCAAATCCATCCCACATAAAACATCAAGAGTGACAGAAGAAGTGGCCACACTGCATAATTGTACACCGAACCTGCAAAATATCTGTCATTTTTAGGAACACACTTGACTGAAGGAAAACTGTACcttcaataagaaaaaagaccacgcttaaaataaaaacacattttgccaaGGGTCAAACAtgcaaatatctttttttttttttttgcaatgataGGTTAAGATTTCAATCGCttacagtgaaaaaaattaGCCCTATGAACAcaagaatgaaaataaacttGTTCTCAAGTTAGAACCCTGCACACTGTAACATAAATTGTTCAGGCTGAGGACATGACAATGCTTTCTGTCAaacatccatatatatatatatgtccatTCTCATTAGCATATTCGCCCATCATGCCAGACCATACAGTTATCAGTCTGAACTCTGTGTGGCACTAACTGGTACAAGTTAAGCAAAAGAAAGACACATTTCTTTACacgaaaaagaaaaacactaaacatgGTCTTTGAATTATACATAATCTAAAAGCtggaatgcaaaatagaaagaaagatgcATGCATGTATCTCATAATGTACTCACGGTTTcacaaactctcacacacttagcaaaaaaatgaataagtgTGGCAATAAAAGTGGTGTTTTCTTAAAGACCACAAAATAGATATTTACACagcaattattaatataaacattgtgCTTGAATTGGAGATCTGTTTGGCTGAgagtattttttataaaatgtgaataaagaaaatgtatatttcacacacaaaacaaactcaTATAGAGCTATATAGGTATATGGGAAAAGAATAGGGTTTTAGGGACCACCAGCAAAGTTTATATGTTCATTGGTgggattaaaaaagtaaatatggCACAGACTAGTGATTATACCACTAAATGACCAAATTTACTGAttaatctatttaaataattggCTAGTTAGAAAGTTGACTAAGTGTAATTTTTGTCCAATCCATGTAATACTAGCCAAAAATACCTCAATTCTGCATGTAAGAAGTAATCCTGACTAGTTATAGACTATTGCTGGTTGTCCAAGAGTGGTTGGATTAATATACATAAATGATTAAgtctataacatttaatttgattagTAAGCTTCACTGCAACATATTTGACTtggaattaaaaacaaaaaaaaaaaacagaagggtGTTCTTGACAGAACAGCACTTATTTAACTGTTATATAAGCAAGAAAGATTATTCTGCCTCCCAGAGCTAGTCAGGGTGCCGTCTGTGAAAACACGTAGTGATAGTAAAGAAATAAGTAACATTTGTACTTATCATATTATAATTTTGATGTTCTCTGCAGTCATCATTTTTGGCCAGGTTGAATTGTGCAAATATtctaatttcatttcatatctAATTAAGTAAAACGCATTTCTAAACTTACATCTTTGCTGTATTCTCACTGTACACTATGGAAAAAAAGGATATTTACACTTATAAAATACAAGCAGATGCCATGGCAAAGCTCTTTCGTAATATCCTGTAACACCCATCTCATTCTTACCTAAGGGTGCacaaaaagaaagggaaaaaaattaattcaaaaccaagtgtggaaaaataattaattgattgatggTTGTTTGTCCAGTATTTGAACTAACATCCTGCAACTCAATTCAAATATATAAGACATCCCAGGTATTTCTCCTGTCTGATTTTTAAGTCTAATAAAtgcactaaataaatgaaagttgTTATCTATAGAACAGGTTTCACGCAGAGCTGTGCAAATTCAGTTCAAAACTAATTTTGTAAAACAATAATTCTGAATTCAAATCCGTGCTACACAATCATACAATTTATGATTGTGTTGTGTCTCTGCACGTAATTGGACATTGCAATTCCATATCAGGCGTCTTTATCACAAATAACGATCTAGAATCATGGATACTCATCCAATGACCAATCTGTGTGCAGTGACCAGAAAGATGCCATAACAACATGACCTGTATAATTAGAATTCTGGGACTCCTGCTAAGGCACATAATGTGCTGTGTACTAAACCAACGCTCTACTGACATGAATGCAACattataaaaattgtaaagCCATAAAAAGAGATCATAATAATTGTCCTTCAGCACAATATCTGGAGTACAACTTAAGTACTTTGCAAATCATGCCTTTTACATATAATTTTACAGCActcaataaatgaaataaacatgaataattaatagtaaataaagctgaaaggaaaacaagtttgtctacatttttttccagcttGGCATTGTCCCTGGCGGTCCTGGAGTTCCAGATCAGGGCAAAATGGCATGATGATGTAAGACAATGCAAGCTCAGTTGACAAATACGATCAAATGACAGCCCATGATGAAATAAGAATTCTCTGAAAAGTAGTATGCTAACAAAGAATTGTAAGCAGAGTACAAAGATATTACAGCATATAACATACAGAAATCAATCCCAAACTGAACATCATAAACATTATAATCATATCTAATAATATTAGTGTTAACATCATCAATACAATTATTGTAAGGTTTACCCTGTTGTTTCTAGACAATAACTGATTTCTCTTCACGATCGTACCAGGTCTCTGTACCTAAGCTGGATCGGACATTGTGTTTTGGTATAAGGAGCAGAAAAATAGAAGGgataataaaaagaagagagGATAAAATAGCGGGATATACTGAGGTTGTCACTATCTGGTCTGAGCTTTTGTCTTGTGAGCAGGTCCCTTCTCTCTATTTACAGTGATCCAACAGTGCTACGTCCACCTGTATCAAGCATTGATGAGTTCCTCTTGCTTGCTTTCTTGGTTTTGAAAGTGAAATTACAAAGTAGACACGATCTGTTGGTCATTACCTTAGTCTGCTGCCTCCTTGCTTTTGAAATACATTTCTCTCTttatgtttctctctttctgcctctttctctcacttgcACAtaaacatcagacatcagatTCAATGCTGGAGAGCTTCTCGTATACGTGTCCATTACTTGAGCCATTGAAAGGTCTCTGTCCTTGCCCCATCCCTAACCCGTCCCTTGCTGACAGCAGCTTGTTGTTGCCTGCTGCCCCTCCATGGTGGTTGCTGAGGGGCCCACCCAGGCACAGCTCCTTGGGAAAACGGGGTCCCACGTTGGACAAAACCCCGGCAGAGGCAGAGGCTGGCAAATAAGAAGTCACCCCCATGGAGCCGCGGAAGTCTGCccggttgttgttgttgaggagctgttgctgctgttgcgTCTGTTGCTGCTGTGGCTGTGCCTGCTGCTTTTTGATGTAGTACGATTTGGCGCCATGTAATAGGCACTGGTCATCGCCGAAGGTTGGGATGAATGGGTTCTGGTTCACCTTATCTGGGTAGAGAGATTTAGACAAGGAGTAAGTCCCAACCCCTCGGGTACCTCCCATACCTCCTCCCATCATGCCTCTATCCCTGTCCCTCATGTCTCTTTCGCCTACCGAGCGACGGTGCAACCCAC

Function

symbol description
grin2bb Predicted to enable NMDA glutamate receptor activity. Predicted to be involved in excitatory postsynaptic potential and long-term synaptic potentiation. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of NMDA selective glutamate receptor complex. Predicted to be active in postsynaptic density membrane. Human ortholog(s) of this gene implicated in several diseases, including alcohol use disorder; autosomal dominant non-syndromic intellectual disability 6; bipolar disorder; developmental and epileptic encephalopathy 27; and neurodegenerative disease (multiple). Orthologous to human GRIN2B (glutamate ionotropic receptor NMDA type subunit 2B).
grin2b Enables NMDA glutamate receptor activity; glutamate-gated calcium ion channel activity; and glycine binding activity. Involved in calcium ion transmembrane import into cytosol and response to ethanol. Located in plasma membrane. Is integral component of plasma membrane. Part of NMDA selective glutamate receptor complex. Implicated in several diseases, including alcohol use disorder; autosomal dominant non-syndromic intellectual disability 6; bipolar disorder; developmental and epileptic encephalopathy 27; and neurodegenerative disease (multiple). Biomarker of Alzheimer's disease; temporal lobe epilepsy; and vascular dementia.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU443184 False 4121 lncRNA 0.35 1 11238717 11242837
TU443185 True 4597 lncRNA 0.37 1 11238241 11242837

Neighbor

gene id symbol gene type direction distance location
trappc5 trappc5,LOC107712234,LOC107692146,LOC107676838 coding downstream 186129 11046759 ~ 11052112 (-)
mcoln1a mcoln1,mcoln1a,LOC108428233,LOC107561871,LOC107676888,LOC107718592,LOC107603030 coding downstream 192176 11025293 ~ 11046065 (-)
si:ch211-214c7.4 prr36,LOC108258951 coding downstream 218256 11001667 ~ 11019985 (-)
pkn1a LOC108428230,LOC107603033,LOC107712223,LOC107676851,LOC107561874 coding downstream 242476 10949078 ~ 10995765 (-)
map2k7 map2k7,LOC107712243,LOC107692141 coding downstream 291539 10934145 ~ 10946702 (-)
si:ch211-243a20.3 NA coding upstream 4972 11247809 ~ 11258475 (-)
emp1 emp1,LOC108258510,LOC107718756,LOC107692152,LOC107603024,LOC107676894 coding upstream 32425 11275262 ~ 11280128 (-)
LOC113537574 LOC108258505,LOC108439141,LOC107376145,LOC106957017,LOC103468358,LOC106517844,LOC102204789,LOC106930820,LOC102799753,LOC101476653,LOC102083067 coding upstream 59946 11302783 ~ 11308486 (-)
si:ch211-239f4.1 evi5l,LOC108258486,LOC108428244,LOC107676895,LOC107718810,LOC107692153 coding upstream 69928 11312765 ~ 11352381 (-)
LOC113537567 LOC108258496,LOC108428189 coding upstream 118589 11361426 ~ 11370055 (-)
G374196 LOC108258482,LOC107676879,LOC107551907,LOC107603025,LOC107692185 non-coding downstream 810 11237062 ~ 11237431 (-)
G374111 NA non-coding downstream 90568 11147454 ~ 11147673 (-)
G374105 NA non-coding downstream 98430 11139183 ~ 11139811 (-)
G374093 atf7ip non-coding downstream 117410 11084642 ~ 11120831 (-)
G374091 sept3 non-coding downstream 170289 11067731 ~ 11067952 (-)
G374230 ddx39aa,ddx39ab,LOC100304672,LOC107603018,LOC107692155,LOC105901571 non-coding upstream 116006 11358843 ~ 11360421 (-)
G374370 NA non-coding upstream 351129 11593966 ~ 11594981 (-)
G374371 NA non-coding upstream 352355 11595192 ~ 11596239 (-)
G374442 NA non-coding upstream 426156 11668993 ~ 11669256 (-)
G374495 c26h3orf70 non-coding upstream 509737 11752574 ~ 11755115 (-)
lipt1 lipt1 other downstream 365685 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 802874 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 1319462 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 2627400 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 2805803 8429562 ~ 8432438 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 836054 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 1382214 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 2064876 13307713 ~ 13320530 (-)
G375428 NA other upstream 2196382 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 2729499 13972336 ~ 13980251 (-)

Expression


Co-expression Network