G374962


Basic Information

Item Value
gene id G374962
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 12437356 ~ 12437686 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU444049
GTGAAGGGTGACATGTAATGGATGTCCAGGATGTCCCCCAGTGCCTTGTCCTCCTGTGTCCCACCCCGAATAGCTGGCAAAACTCTGACCAGTGCCTTCTGGAATGCTATCTTATAAGAACTGTGTAAGTCCTGAAACTGTCTAATCCTGTCTTTTACATCAGGGAAATTGTCTGTTGTTTGATTTTTGTTCAAATCATTGCATCTTCTCTCTACTTCACCAAGCTCCTCCAGCAGTTTTTCTGTTTGATGCACCAGGCTCATGCTGATTTCTCTCACCAGCTTAGCAGCCTTATTATCCAAAAGCATGAGAGGATACAGCCACACGGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU444049 True 331 lncRNA 0.45 1 12437356 12437686

Neighbor

gene id symbol gene type direction distance location
lbx1b LOC108258340 coding downstream 16801 12418468 ~ 12420555 (-)
cenpk cenpk coding downstream 24325 12407030 ~ 12413031 (-)
rims1b LOC108259070,LOC108441990 coding downstream 37590 12343194 ~ 12399766 (-)
kcnq5b LOC108258980 coding downstream 101049 12231720 ~ 12336307 (-)
ppp1r9alb LOC108258654,LOC105911690 coding downstream 221641 12192221 ~ 12215715 (-)
inab ina coding upstream 28271 12465957 ~ 12471611 (-)
cnnm2b cnnm2b,LOC108258315,LOC108435981,LOC107568787,LOC107699104,LOC107708677 coding upstream 64995 12502681 ~ 12535231 (-)
as3mt as3mt coding upstream 98811 12536497 ~ 12546423 (-)
wbp1lb LOC108259041 coding upstream 125318 12563004 ~ 12570298 (-)
poll poll coding upstream 133353 12571039 ~ 12578393 (-)
G374961 LOC108258298,LOC108258985,LOC108258304 non-coding downstream 136 12436772 ~ 12437220 (-)
G374935 NA non-coding downstream 113781 12322964 ~ 12323575 (-)
G374885 NA non-coding downstream 278441 12158708 ~ 12158915 (-)
G374727 NA non-coding downstream 344620 12092512 ~ 12092736 (-)
G374680 NA non-coding downstream 472575 11963804 ~ 11964781 (-)
G374963 NA non-coding upstream 3635 12441321 ~ 12441539 (-)
G375001 NA non-coding upstream 88934 12526620 ~ 12526819 (-)
G375018 NA non-coding upstream 122915 12560601 ~ 12560825 (-)
G375027 NA non-coding upstream 146759 12584445 ~ 12584659 (-)
G375028 NA non-coding upstream 147474 12585160 ~ 12585597 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 353307 12078891 ~ 12084049 (-)
lipt1 lipt1 other downstream 1564800 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 2001989 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 2518577 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 3826515 8591407 ~ 8610841 (-)
LOC113537246 NA other upstream 187365 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 870027 13307713 ~ 13320530 (-)
G375428 NA other upstream 1001533 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 1534650 13972336 ~ 13980251 (-)
pibf1 pibf1 other upstream 1545059 13982745 ~ 14016151 (-)

Expression


Co-expression Network