G375420


Basic Information

Item Value
gene id G375420
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 13416822 ~ 13417096 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU444588
tatatatatatatatatatatatatatatatatatatatatatatatatatatataaaatgactgcTTGTACCTCTATCTCGCGCTCGCTGCTGAGTTGAAAACCCATGTTATgcttttgttttcaaatgtaGCCATCTGCCATCTGAAACAATATTATATGCATCCTGTTTTTAAATCTGCctttttgccattttattttctgtatacGTTGTAATTTTAATCATGTGTTGCTTACACACATGGAATACAGTGCGGAAATGCCTCCTGGAGCCG

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU444588 True 275 lncRNA 0.31 1 13416822 13417096

Neighbor

gene id symbol gene type direction distance location
cd99 NA coding downstream 67988 13321263 ~ 13348834 (-)
trnar-ucu_18 NA coding downstream 88679 13328052 ~ 13328143 (-)
trnar-ucu_17 NA coding downstream 90738 13325993 ~ 13326084 (-)
trnar-ucu_16 NA coding downstream 91214 13325517 ~ 13325608 (-)
trnar-ucu_15 NA coding downstream 92649 13324082 ~ 13324173 (-)
creb1a creb1b,LOC108258958,LOC107757658,LOC107714305,LOC107552236,LOC107691602 coding upstream 229 13417325 ~ 13427154 (-)
cldng LOC108258891 coding upstream 59376 13476472 ~ 13478258 (-)
lmo7b LOC108259086,LOC108437774 coding upstream 450592 13867688 ~ 13902247 (-)
tpt1 tpt1,LOC107598740,LOC107691594 coding upstream 619334 14036430 ~ 14042668 (-)
LOC113537775 NA coding upstream 620635 14037731 ~ 14037862 (-)
LOC113537738 NA non-coding downstream 15397 13386832 ~ 13401425 (-)
G375329 NA non-coding downstream 145201 13267882 ~ 13271621 (-)
G375141 NA non-coding downstream 583468 12832876 ~ 12833354 (-)
G375121 NA non-coding downstream 674302 12742320 ~ 12742520 (-)
G375119 NA non-coding downstream 675170 12741425 ~ 12741652 (-)
G375455 NA non-coding upstream 81547 13498643 ~ 13505565 (-)
LOC117596174 NA non-coding upstream 87208 13504304 ~ 13507133 (-)
G375466 NA non-coding upstream 103467 13520563 ~ 13520923 (-)
LOC117596119 NA non-coding upstream 412085 13829181 ~ 13830571 (-)
G375614 LOC108259021,LOC107655163,LOC107580539 non-coding upstream 415372 13832468 ~ 13834980 (-)
gyg2 gyg2 other downstream 96292 13307713 ~ 13320530 (-)
LOC113537246 NA other downstream 786419 12625051 ~ 12630403 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 1332773 12078891 ~ 12084049 (-)
lipt1 lipt1 other downstream 2544266 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 2981455 10422152 ~ 10435367 (-)
G375428 NA other upstream 22123 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 555240 13972336 ~ 13980251 (-)
pibf1 pibf1 other upstream 565649 13982745 ~ 14016151 (-)
G375826 NA other upstream 610198 14027294 ~ 14030879 (-)
rnf11a rnf11a,crgm2,LOC108259033,LOC107757048,LOC108441179,LOC103044796,LOC107694828,LOC107583209,LOC108258879,LOC108260578,LOC108260581,LOC108260584,LOC108260582,LOC108280851,LOC108260580,LOC108260664,LOC108260583 other upstream 689110 14106206 ~ 14180614 (-)

Expression


Co-expression Network