G375826


Basic Information

Item Value
gene id G375826
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14027294 ~ 14030879 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU445045
CTTTTTAACCTCATGTAGTGCTCATTGGCGGCTGGTCTGCACTCGGCTCGCTGCACCACCACGCCCTCCAGCGCTATTTTGTCTTTgtgaagagaaacacacacatagagtgAATTATTAAAAGATAATCATCTCATCTGAAAGCAGCACACACTGTGACGACAACAAAGACCAATTCCGTTCAGTCAGAGACGCCATTTTTCCATAACTCTCATTACAAAATTCTCTGGATGCTCCATGTTCCGACACACGACCTACCACAAAATCTTACAGTCTGcttgaggatgaggatgatgatgatgatgatggcggcTTGGGTGATATTCTTATCAGCTCACACCACAACTCATTGCATCATCAGTTAAAACTCATGTGTCAAGACTCTGATTGTTCTAAAGACGCTCCAATAGTCCTGAGAGTAGACAGAGGACTCACCTGGGCCTGTACCAGTACCTGAACCGCTGCCTTCAGGGTCTGACTGGCCTATGAGAGGGATGGCAACATGAGAACCAAAggaacacacacccacacacacacacgccaagcatcatacatacacacacactgctaccaGCCAAGCcccacatagacacacacacacgccaagcttcatacatacatacatacatacatacacacactgccacgAGCCAAGCCCCACgccccacacagacacacacacagatgcacacgtTGCAAGGAGTCAATTAAGGGCTCACAGCTTGCTCACAAATTTCcctcatcactcacacacacacacacactcatagtgTGCAACCTGTCTAATGTGAACACAGCTGCACAGCCACGCCCCAATCCCAATTCTGAAGCACGTTCACTTCACTCCTACTCCAACAGCCAGACTCCAAACCTCAGGAAACTGTATTTATGAATGTGATGTCATTTCGaacaacagacaaacacactgtTGGGAACTAATCGGGTGCTTATCGCTTACTTTATGAACTTTCCCCATGctgatcatgttttatttaaatggacATCTGTAAATAACTTATCATGGCGATAAATGACATGAGTCGTCCCCAAATTTAGTCACCTGCCACAATTCCCAGCTCCCAGCCAAAAAGTGTGAAGGCTAACATTTGTGTCCTCTGAAACAAGCatcttttaaatttatttatttattttttttttgcatcacagggtggtgtaacacagtctgaggaaagtgctatctgctctcttccgcatacatgagctcaaagacacatatgattggctaatgttgctgtgattgacaggggagagagagtataccatccctcccacccagagagcacgacGAATTTTTGTCTctccaacaaaaaaaagttcaaactCGTAACCTCCCGAATCTAGAATGAACGCTTTTCTGCTATGCCACTCGGGAGCCTTGTTACGGGTTAGTTTCTGGTTGAAACGGGCAAACGGGTCTGAGACACAGAGCCTAGTGACCACCAGAACCAGTGGAGGATATTCGGGGGCACTCACATTATGAGTTATGGGAGATCCATGGAGATGAGTGAGAACCGCTGAGTCTCCTTgatacatttacttttacatagGAATTTAACAGTACTTAATCAAGGTGTGAATGTGAAATGAACAATAGGGCTCATGTGTGAACAAAAATGGATAAATTACTGGGAAAGATACACTGACACTTTCTGAGGCGGCTGATTGGTGAGGAATAAACACTAAACGTGTGCTGTTaggagaaaataatcaacgatgacGTCTTATGATGCGGCCCAActtgaagcagagttactgctaccatccagaattttattattttaaaatatcggaatctcctgaagtgttttattcctcttatactggaGTTTCCCAATGATTGCGATGTCTAACTTATTGTGTCAATGTCACAATGttcttttaaccatttaatgttgtggaacatctggaaagcaagttagttcctgttattagtTATGTTTTAGCAGCgataaacagccgttccctcaccagctcgtcttttctcttctcagcttgtcacgttactgagaaaccacaaagcacacacttctctgttctgaagactttcccatggtggaaaactgttacaaagctctgacactgcaggctccttccatatatgtcactgtgaatgagctgttactatagaaacgataacgcattagaataagcgcattaatataaccctgtgcTTTgcattacagccagcactactgtcagagctgctgttagagaaaatgaatcaacatcttctgaccaatcagaatcgagaattcgaTTCAACAGAGCTGGAAAATAGAGTGGTTTTGAAATGAAGGGCTGCTGAGAAGAAGATTTATCTCTTTAAGACTGGAAGTCTGAATGATGCATAATGCAAACATTATTAGTAAAAAGATGCAGAGATAATGTCCTGGGTTTTATGGACATTACGACTATACTGAAGAAGgtgaaaaatgataaaatggaGCTTCCAGTAATCATTTTGTACTTGGATTGTCCCGAGAGCTGGAGTGAGGAGAGAAGAAAACCTCTTCATATTGAGATTGACCTGCAGTGTCTCTCTGAGGAAAATCCCCCAAACTTAGTTCTGACGCTGAAGCAGACTCGAGCTCACCCTCAAATACAAGTCAGTGAACAGTGTttatcatgcacacacacacacgcgcacacacacacacacacacacacacaaaacccaagCTTAGCACAGAAACACCGGtcaagtaagagagagagagaagcgaaGCTTGATTTGGCTTGTGGAAACCAGGTTATTTTCATAGAAGTGCACCATCGAATCACACACCCACGGCACGGCAACACGGCACGACACACACTGATCCATTAATGAAGCAGACGTGAAGGTCGCGCACGGGCAGCGGCGGAAAGCTCAACACAAACGGacaggatcatcacaccaaaaatGCCGGATCGATCGGTCACTGAGAATCGCCCGGATCGAGAAAACAAATCGAGTATGAGGAGCAAGATATAACAAATCGagccaaagagagagagagagagagagagatacaaagagaaagagaaagagaggcacaaagaaaaagagaaagagagagatacagagagagatacaaagagaaagagagagatacagagagaaagagatacaaAGACATAGaaaaagatacagagagagatacaaagataaagagaaggagagatacAAAGAAAGATTGTGATACAGAAACAGATAtacacatggagagagagatacagagagagagagagaaaaagagagagagagatacacacaaggagagagatacacacatggagagagagagagatacagagagagagggagagagagagagtcactaGAGCTGAAAGCGAGACAGCAAACCCAAACAAGCGAGCGTTAAAGACTTACCAGTGCAGCAGCTCAGATGTTTCTAACACATCAGCGCTTTAATAATATCAACATTATCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU445045 True 3454 TUCP 0.43 2 14027294 14030879

Neighbor

gene id symbol gene type direction distance location
lmo7b LOC108259086,LOC108437774 coding downstream 125047 13867688 ~ 13902247 (-)
cldng LOC108258891 coding downstream 549036 13476472 ~ 13478258 (-)
creb1a creb1b,LOC108258958,LOC107757658,LOC107714305,LOC107552236,LOC107691602 coding downstream 600140 13417325 ~ 13427154 (-)
trnar-ucu_18 NA coding downstream 699151 13328052 ~ 13328143 (-)
trnar-ucu_17 NA coding downstream 701210 13325993 ~ 13326084 (-)
tpt1 tpt1,LOC107598740,LOC107691594 coding upstream 5551 14036430 ~ 14042668 (-)
LOC113537775 NA coding upstream 6852 14037731 ~ 14037862 (-)
LOC113537774 NA coding upstream 7649 14038528 ~ 14038598 (-)
LOC113537776 NA coding upstream 7975 14038854 ~ 14038986 (-)
LOC113537289 NA coding upstream 37296 14068175 ~ 14073205 (-)
LOC117596131 NA non-coding downstream 166520 13853076 ~ 13860774 (-)
G375615 NA non-coding downstream 190761 13836098 ~ 13836533 (-)
G375614 LOC108259021,LOC107655163,LOC107580539 non-coding downstream 192314 13832468 ~ 13834980 (-)
LOC117596119 NA non-coding downstream 196723 13829181 ~ 13830571 (-)
G375466 NA non-coding downstream 506371 13520563 ~ 13520923 (-)
G375864 NA non-coding upstream 48085 14078964 ~ 14085441 (-)
G375871 NA non-coding upstream 90619 14121498 ~ 14125258 (-)
G376038 NA non-coding upstream 291305 14322184 ~ 14340390 (-)
G376048 NA non-coding upstream 352329 14383208 ~ 14455469 (-)
G376050 snrpb2 non-coding upstream 355459 14386338 ~ 14387875 (-)
pibf1 pibf1 other downstream 11143 13982745 ~ 14016151 (-)
klf5a LOC108259069 other downstream 47043 13972336 ~ 13980251 (-)
G375428 NA other downstream 587759 13439219 ~ 13439535 (-)
gyg2 gyg2 other downstream 706764 13307713 ~ 13320530 (-)
LOC113537246 NA other downstream 1396891 12625051 ~ 12630403 (-)
rnf11a rnf11a,crgm2,LOC108259033,LOC107757048,LOC108441179,LOC103044796,LOC107694828,LOC107583209,LOC108258879,LOC108260578,LOC108260581,LOC108260584,LOC108260582,LOC108280851,LOC108260580,LOC108260664,LOC108260583 other upstream 75327 14106206 ~ 14180614 (-)
dand5 LOC108258523 other upstream 243448 14274327 ~ 14276537 (-)
meis1a meis1 other upstream 429404 14460283 ~ 14524516 (-)
G376143 NA other upstream 651508 14682387 ~ 14684328 (-)
ifngr1 NA other upstream 666360 14697239 ~ 14712646 (-)

Expression


Co-expression Network